Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01768 ATGGAGGGAAAACTTCTAAATCTGAGATCATCATATTCCTTTATTTTTCTGCTATTTCTAAGCTTCAAGTCACTTAATACAAAGGCACAATCGCCAAACTATGTGGGAGACGATTGCGAATACAGCACCTCAAAACCTCTCAGCACCGCATACCAAACCAACCTTAAAAGCGTCCTCTCATGGCTATCAACAGATGCAGCCACAAGCAAAGGTTATAACCACAACAGCTTTGGCAACAACACCCCTGGAGATGCTGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTTGCTGGATACTTTTGTCAATTCTGTGTCTCTACTGCTTCTAGAGAAGTTCTTCAGCGCTGCCCCAATAGAGTATCTGCTATTATATGGTATGATTTCTGCATCCTAAGGTACTCTAATGAGAACTTCTTTGGGAATGTCACAGTAGACCCATCATGGCATGCTGTTGGGACCAAAAATGTCTCTAGTGCACAAGAGATTCAGAAAGGTGAGGATTTTATGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACCAGTTGTACTATATGGATGGTTTCAACTTGAGTTCCACTCAGAGAAGGTATGGCTTGGTTCAGTGCAGTAGAGATCTCACAAATGATGGGTGCAGACAGTGTTTGGAGACCATGTTAGCGCAAGTTCCCAAATGCTGTGAACATAATTTGGGATGGCAAGTTTTGGCCGCAAGTTGTCTCATAAAGTATGATGATTATATTTTCTATCTTTTTCACACTCAACCATCTTCAGTTTCTGTGCCTGATACCCAAATAGCTAAAAAAAGGGGTGCTGGTAAAACAAGAATATTAATCATTGGCTTAAGTGTGCTGGGGGCAGTAGCTTTACTATGCTTCAGTGTCTATTGTTTATGGTTCaggaatagaaatagaagacaaagaggaagagGTGGTCGAATACCTGATACTATTCGTCCATCATCATATCACAATGTTCAAACGGAGGAAACACTGAATCCAGACCTACCTACTATTCCATTAATCACAATTCTTAAGAGTACTGATCACTTTTCAGACGAATCTAAGTTAGGAGAAGGTGGATTTGGCCCCGTTTACAAGGGAACTCTACCAGATGGAAGACAAATTGCGGTCAAAAGGCTCTCACAAACTTCTGGTCAAGGCTCCGAAGAGTTCAAAAATGAAGTAATGTTTATAGCTAAACTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGAACAATGAAAAGATACTTGTATATGAGTATTTGTCGAATGCAAGTCTCGACTTTCACCTGTTTGATGATAGAAAGAAAAGGCAACTGGATTGGAATATCAGATTAAGCATTATCAATGGCATTGCAAAAGGTCTTTTATACCTTCATGAGGACTCTCGACTCAAAGTTATTCATAGAGATCTTAAAGCTAGTAATGTTCTATTAGACGATGAAATGAATCCAAAAATATCAGATTTTGGATTAGCAAGGTCATTTGAAAAAGGCCAGAATCAGGCAAATACAAATCGAGTAATGGGTACTTATGGATACATGGCTCCAGAGTATGCTATGGAAGGGTTATTTTCAGTGAAATCCGATACTTTCAGCTTTGGAGTTCTTGTTCTAGAAATCATTTGTGGGAAAAAGAATAGTGGATTCTATCTATCAGAATGTGGTCAAAGTCTTACATTATATGCTTGGAAAATATGGTGTGCAGGAAAATGTTTGGAACTAATGGATCCAGTGCTGGAGGAATCTTACATAGAGAGTGAAGTTGTGAAATGCATACACATTGGTCTGTTATGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCCACTGTTGTTGTAATGCTAGCAAGTGACACAATGGCCCTTCCAAAACCTAACCAGCCAGCATTTTCGGTTGGAAGAATGACCTATGAGGATGCATCTACATCGAAAAGTTCCAAGAGTCTTTCCATTAATGATGTAACTGTCTCAAACATTTTACCAAGGTGA 2013 0.3929 MEGKLLNLRSSYSFIFLLFLSFKSLNTKAQSPNYVGDDCEYSTSKPLSTAYQTNLKSVLSWLSTDAATSKGYNHNSFGNNTPGDAAVYGLYDCRGDVAGYFCQFCVSTASREVLQRCPNRVSAIIWYDFCILRYSNENFFGNVTVDPSWHAVGTKNVSSAQEIQKGEDFMRSLIRKATVETNQLYYMDGFNLSSTQRRYGLVQCSRDLTNDGCRQCLETMLAQVPKCCEHNLGWQVLAASCLIKYDDYIFYLFHTQPSSVSVPDTQIAKKRGAGKTRILIIGLSVLGAVALLCFSVYCLWFRNRNRRQRGRGGRIPDTIRPSSYHNVQTEETLNPDLPTIPLITILKSTDHFSDESKLGEGGFGPVYKGTLPDGRQIAVKRLSQTSGQGSEEFKNEVMFIAKLQHRNLVRLLACCLENNEKILVYEYLSNASLDFHLFDDRKKRQLDWNIRLSIINGIAKGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARSFEKGQNQANTNRVMGTYGYMAPEYAMEGLFSVKSDTFSFGVLVLEIICGKKNSGFYLSECGQSLTLYAWKIWCAGKCLELMDPVLEESYIESEVVKCIHIGLLCVQEDAADRPTMSTVVVMLASDTMALPKPNQPAFSVGRMTYEDASTSKSSKSLSINDVTVSNILPR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01768 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Cca04g01768 670 Pfam Domain of unknown function (DUF3403) 625 670 IPR021820 GO:0004674
Cca04g01768 670 SUPERFAMILY Protein kinase-like (PK-like) 337 655 IPR011009 -
Cca04g01768 670 Pfam Salt stress response/antifungal 167 248 IPR002902 -
Cca04g01768 670 Pfam Salt stress response/antifungal 45 136 IPR002902 -
Cca04g01768 670 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 20 668 - -
Cca04g01768 670 Gene3D Phosphorylase Kinase; domain 1 317 427 - -
Cca04g01768 670 Gene3D - 148 250 IPR038408 -
Cca04g01768 670 Gene3D - 33 139 IPR038408 -
Cca04g01768 670 ProSiteProfiles Protein kinase domain profile. 352 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01768 670 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Cca04g01768 670 SMART serkin_6 352 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01768 670 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Cca04g01768 670 CDD STKc_IRAK 358 623 - -
Cca04g01768 670 Gene3D Transferase(Phosphotransferase) domain 1 428 633 - -
Cca04g01768 670 Pfam Protein tyrosine and serine/threonine kinase 355 622 IPR001245 GO:0004672|GO:0006468
Cca04g01768 670 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01768 Cca-Chr4 31711229 31715338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01768 8 670 Receptor kinase-like Gene Family AT4G05200 41.752 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01768 PK_Tyr_Ser-Thr 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01768 - - gmx:100796972 1159.44