Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01767 ATGGGAACACAACTAAACATGAGATCAATATCCTTTACTTTCTGGTTATTGCTGAGTTTCAGAGCACTCTTTACAGAGGCACAAGTACCAAATTTATTGGGAAGTAATTGCCAAAACACCAGCCAACAACAACAACCTCTCAGCAGTGCATACCAAACTAATCTTGAGAGAATCCTTACATGGGTATCCTCTGATGCATACAAAGGCAAAGTTTATAACTACAGAAGCATAGGCATCACCTCCTCTGTGTATGGCCTCTATGATTGCCGTGGTGACGTGGTTGGATACTTTTGTCAATTTTGTGTTTCTAATGCTGCCAGAGAAGCCCCTCGGCTCTGCCCCAATAGTGTATCTGCTATGGTGTGGTATGATTATTGCATTCTAAGGTACTCAAATGAGAACTTCTTTGGGAAAGTTCTCACAAACCCAATATGGTATGTTCTTGGAACCAAAAACATATTCAACAAGACAGAGATTCAGAAAGGTAAGGATTTTGTGACAAGTTTGATAAGAAAAGCAACTAAGGATACCAACCAGTTGTACTATATGGATGGCTTCAGTATGAGTTCCACTCAAAGAAGGTATGGCTTTGTGCATTGTAGCAGAGATCTCACAAGTGAAAGATGCAAACAGTGTTTGGAGGCGATATTAGCTCAAGTTCCCAATTGTTGTGAACAAAAATTAGGATGGTTTATTTGGACCGGAAGTTGTATGATAAAGTATGATAATCATATGTTTTACCTTCTTAGCAACCAAGCATCTTATGTTTCTGTGCCTAATCCGCAAACAGCTGAAAATGGGGGTAATAAGAGGATAAAAAGCTTGATCATTAGCTTCGGTGTGATGGGGTCAATAATTCTATTACTATGTTTTGTATATTGCTTCCGGTACATGAGCAGAGTCAGAAAAGATGGGCTTTGTCTTTCTTCATTTCGTAAAATTCAAACTGAGGAAACTTGGAAAACAGACCTGCCTATAATCCCATTAATCACAATTCTGCAAAGTACTGATAACTTTTCAGAAGCATCTAAATTAGGGGAAGGAGGATTTGGCCCCGTTTACAAGGGAATTCTACCAGATGGAAGACAAGTTGCAATCAAAAGGCTTTCAAATTTTTCCAGTCAAGGCTCAGAAGAGTTCAATAATGAAGTAATGTTTATAGCTAAATTGCAACATCGCAACCTTGTAAACCTTTTGGCATGTTGCTTGGAGGAAAATGAAAAGATACTTGTATACGAGTATTTGGCGAATAAAAGTCTTGACTTCCACTTGTTTGATGATGAGAAAAGAAAGCAATTCAATTGGAAACTAAGATTCAGCATTATCAACGGAATAGCAAGAGGTATTTTATACCTTCACGAGGACTCTCGACTCAAAGTGATTCATAGAGATCTCAAAGCTAGCAATATTCTATTAGACCATGAGATGAATCCCAAAATATCAGATTTTGGATTGGCAAAAGCATTTGACACAGGACAGAACCAGGCAAAGACAAAACGAATAATGGGCACTTATGGATACATGGCTCCTGAATATGCTATGGAAGGAATATTTTCGGTAAAATCTGATGTTTTTAGCTTTGGAGTTCTTGTTTTAGAAATCATATCTGGGAGAAAAAATAGTGGATTCTATTTCTCAGAACATGGTCAAACTCTTCTTTTATATACTTGGAGAAAATGGTGTGCAGGAAAATATTTGAAATTGATGGATCCAATGCTGGAAAATCCCTTTACAGCAAGTGAAATAAAGAGGTGCATACACATTGGTTTGTTGTGTGTTCAACAAGACGCAACATATAGACCACTCATGTCTGATGTTGTTGTAATGCTGGCAAATGACACAATGGCTCTTCCCAAACCCAAGAACCCAGCATTTTCAATTGGAAGAATGGCATCAGAGGAAGTACCTACATCAAAAAGTTCCAAGAATATTTCCAATAATGATGTAACAGTCTCTATCACTTTTCCGCGGTAA 1974 0.3789 MGTQLNMRSISFTFWLLLSFRALFTEAQVPNLLGSNCQNTSQQQQPLSSAYQTNLERILTWVSSDAYKGKVYNYRSIGITSSVYGLYDCRGDVVGYFCQFCVSNAAREAPRLCPNSVSAMVWYDYCILRYSNENFFGKVLTNPIWYVLGTKNIFNKTEIQKGKDFVTSLIRKATKDTNQLYYMDGFSMSSTQRRYGFVHCSRDLTSERCKQCLEAILAQVPNCCEQKLGWFIWTGSCMIKYDNHMFYLLSNQASYVSVPNPQTAENGGNKRIKSLIISFGVMGSIILLLCFVYCFRYMSRVRKDGLCLSSFRKIQTEETWKTDLPIIPLITILQSTDNFSEASKLGEGGFGPVYKGILPDGRQVAIKRLSNFSSQGSEEFNNEVMFIAKLQHRNLVNLLACCLEENEKILVYEYLANKSLDFHLFDDEKRKQFNWKLRFSIINGIARGILYLHEDSRLKVIHRDLKASNILLDHEMNPKISDFGLAKAFDTGQNQAKTKRIMGTYGYMAPEYAMEGIFSVKSDVFSFGVLVLEIISGRKNSGFYFSEHGQTLLLYTWRKWCAGKYLKLMDPMLENPFTASEIKRCIHIGLLCVQQDATYRPLMSDVVVMLANDTMALPKPKNPAFSIGRMASEEVPTSKSSKNISNNDVTVSITFPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01767 657 Pfam Domain of unknown function (DUF3403) 612 657 IPR021820 GO:0004674
Cca04g01767 657 Gene3D - 144 246 IPR038408 -
Cca04g01767 657 Gene3D - 31 135 IPR038408 -
Cca04g01767 657 ProSiteProfiles Protein kinase domain profile. 339 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01767 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Cca04g01767 657 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Cca04g01767 657 Pfam Salt stress response/antifungal 164 243 IPR002902 -
Cca04g01767 657 SMART serkin_6 339 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01767 657 SUPERFAMILY Protein kinase-like (PK-like) 314 610 IPR011009 -
Cca04g01767 657 CDD STKc_IRAK 345 610 - -
Cca04g01767 657 Gene3D Phosphorylase Kinase; domain 1 306 414 - -
Cca04g01767 657 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 19 653 - -
Cca04g01767 657 ProSiteProfiles Gnk2-homologous domain profile. 31 135 IPR002902 -
Cca04g01767 657 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
Cca04g01767 657 Gene3D Transferase(Phosphotransferase) domain 1 415 620 - -
Cca04g01767 657 Pfam Protein tyrosine and serine/threonine kinase 343 608 IPR001245 GO:0004672|GO:0006468
Cca04g01767 657 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01767 Cca-Chr4 31640389 31645243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01767 11 657 Receptor kinase-like Gene Family AT4G05200 40.713 1.70e-167 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01767 PK_Tyr_Ser-Thr 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01767 - - pvu:PHAVU_011G194500g 970.689