Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01757 ATGCCTGTAGAAGAAGTATTTTTGTCAGCTTTCCTTCAGGTTTTGTTTGACAGGTTGGCCACAAAGAATGTTATTGAGGTTATTCTTGCAGGAGACAAAGGCAAAATCCTAAAGAAATTTCAGAAGACTTTGCTTCTCATTAAAGCAGTACTTAACGATGCAGAGGACAAACATGTAAAGAATGACGCTGTGAGAATGTGGCTGGTTGACCTTAAAGATGTTGCTTTTGATGCAGAAGATATTCTTGATAAGTTTGCTACTGAAGTGTTGAAGAAGAGGTTGGAATCAATTTCTCAATCTCAAGTTCAAACCACCTTCACTCGAGTATGCAATCTTATCCCAACTTCTCTCAATCCGAGCAATTTAATGTTTGATGTTGAGATAGAATTAAAGATAAAGGCAATCACCGAGAGACTGGAGACCCTTGCAAATGAAAGGCATGAGCTTGGTTTAAGTGAGGTGGCTGCTAGGTGTTCATTCAAAATCAACGAAACAAGTTCCACGGTGAATGAGTCCTACATCTATGGCAGAGATAAGGACAAAGATAAGATTATCCAGCTGCTGATGGAGAATAGGCCAAGTCATGGTGATGAAGTCTTGGTCATTCCCATAGTGGGAATGCCAGGTATTGGGAAAACAACGTTGGCTCAAGTTGTGTTCAACGATGACAAAGTGAATACCCACTTTGAACTCAAGGCTTGGGTATCTATACCTGATGATTTTGATGTCAAGGTTGTAACTGGAAAGATCCTAGAGTCAGCCACTTCTATAACTTGTGATTTCAATAACTTGCATCAGCTTCAAATTAAACTCAAAGCAGCCTTGAGTGGCAAGAAATTTCTGATTGTTTTGGATGATGTGTGGAACAAGAATTACAATGAATGGATTAAGCTGGTAGCTCCATTCAGAGGAGCCGCACGGGGAAGCTCGGTGATTGTAACAACAAGGAGTGCTGAAGTTGCCAACATGATGGGAACTGTTGAATGTCACTATGTCAACCAGTTATCTGATGAGGACTGTGAATCAGTGTTTATGCAGCATGCTTTTAGGAGTAAAACTATTGATGCAAATCATGCCTTTACAGAACTTGGTAAGAAGATTGCTAGGAAATGCAAAGGGTCACCATTGACTGCAACAACACTTGGGGGTAATTTATCCTCACAGCGAGATGTAAGAGAGTGGGAAAATGTAATGGATTTTGAAATATGGGATCTTGCAGTGGAGGAAAGTAACATCCTTCAAACATTAAGATTGAGTTATAATCAGCTTCCTCCATACCTGAAGCCGTGTTTTGCTTACTGCTCCATACTACCAAAAGGCTTTGAATTTGAGGAGAAAGAGCTTGTGTTGCTATGGATGGCTGAAGGACTTTTAGAGCAACAATCTCAAAAGCAACTGGAAGATATTGGCCATGAGTACTTTCAAGAGCTACTATCTGCATCACTTTTTCAAAGGTCAACTAGCAACAGATCATTGTATGTAATGCATGACCTTATCAATGATCTAGCTCAATGGGTTGCTGGAGAGTCCTGTTTCAAATTGGACAATCATGTTCACCCTCACAGACGAAAGAAAAAGAAAATTTCCAAAAGGACTCGGTATGTATCTTACATTGGTGGTGAATATGATGGTATTCAAATGTTCCAGGCCTTAAAAGAAGCCAAGTCCTTACGAACATTCCTCCCTCTAAAGCATTCACGGCTTGAAGAATGGTCCTACATAACAAATCATGTTCCTTTTGAATTGTTACCCGAGTTAAGATGCTTAAGGGCATTATCATTGAGTGGATATTTCATCACAAAGCTGCCTAATTCAGTTAGCAATTTGAATCTTCTACGCTACCTGAATCTTTCTTGGACTGACCTCAGACAGTTGCCAGAATCAATCTGCAGTCTATGCAATCTGCAAACATTACTACTGAGAGATTGTTTTAATCTTGAGCAGCTTCCATCAAACTTGAGTGATTTGATCAACCTACGTCATCTAGATATCACTAGAGCACATTCTTTAACAGATATGCCCCATGGTATTGGTAAATTGACACATCTTCGAACATTGACAGATTTTATTGTAGGCTCAAGTGGGATAGGAGAATTGATGAAGTTGATCAATATCCAAGGAGTACTTTCTGTTTCCAGGTTAGAGAATGTGTCTGACACTCTAGAGGCAAGTGGAGCTATGTTAAATAAGAAGGTAGGCATTGATGTGCTGAAATTGAAATGGAGTTTTATGAATAATCAGTCACATATTGAAAGAGCAAAAGATGTGCTTCATATGCTAAAGCCTCACAAAGGTCTTGCAAAGCTTACGATTAAGTGCTATGGTGGTACAAGTTTCCCAAAATGGATAGGAGATCCATCCTACAAGAGCCTAGTGTTCTTAAAGTTGAAAGATTGTGCAAATTGTACATCTTTGCCAGCACTTGGAAACCTCCATGCCCTCAAAGAACTTTACATTATTGGAATGAAAGAAGTATGCTGCATTGATGGTGGATTCTATGGTAATGCTTGCTTTAGACCTTTTCCTTCCTTGGAGAAACTACACTTTATGGACATGGAAAAATGGGAAAATTGGTTCCTCTCTGACAACAATGAGCAGAGAGACATATTTTCTTCTTTGCAGCAGATTTTCATTGTTAGGTGTCCCAAACTTTTGGGTAAACTACCAGAAAATCTCCCATCTCTCAAACATGTACTAGTTAAAGAATGTGAACAATTTCTGGTAACCATTGCAACCCTTCCAATGCTTTACACACTAGAAATTGAAGGATGCAAAGGGTTAGTCCTTAATTGCGCAAATGAATTCAATTCACTGAATTCCATGTCTGTTTCAAGAATCTTGGAGTTAACATTATTAATGGAGAGATTGGTAGAGGCATTCAAAAATGTAGAAGAACTCAAAATTGTCAGTTGTGCTCTTGATGAAATAGTTCTTAATGATTTATGGGGAAATGAAGTTTGGCTTGAGAAGAATCCACATGTTTTTTCATCCAAGCTCAAATTAATTGAGATTAGAAATTGCAATGTCATGAGATCTGTACCTAAAGTACTAATGGTTAACAGTCATTGTCTTGAACGCTTGTACATATGTAACTGTGATTCTCTAGTCTTTATCACAATGGATCAATTTCCTCCGTCTCTGAAATCATTGGAGATATCCAATTGCAAGAACTTGAGATGTTTACTTGAAAATGGAACAAGCTCTTCTTCATCAATAATTATGCATGATGACAATGTACAGCAAAGTGGCAGAAACCACAGAATCATTTCTCATTTGGAATATGTATACATTGGCTGGTGTCCATCTCTCACTTGCATTTCAAGAAGCAATGAGTTACCTGAATCTGTCAAACTTTTGTTCATTTGGAACTGTTTAGAGCTATCATGCTTGTCAATGAAAGACCAACTACCAAAAAGTCTTGAAAAACTGGAGATTCAAAACTGTCCAAAGCTGAAGTCAATAGCAAACAGGTTGCACAGAAACACCTCCTTGGAATCTATTCAGATATGGAACTGTGAAAACCTCAAATCCCTTCCTAAAGGACTGCATTTCCTTGTGAATTTAAAGGAGATCAAAATTATTGGTTGTCCAAATTTGGTTTCTTTTCCAGAAGAAGGTTTGCCAACCTCTAGTCTGACAGAACTTTGCATCATGGGCTGTGAGAAACTAGTGGCCCTACCAGGCTGCTTGCATGATCTTGACTCCCTCAAAGAGCTGGAAATAGGATACTGTCCTAGTGTTCAATATTTTCCTGAGATAAACTTTCCAGACAACTTAACATCCCTTTGGATCAATGACCATAATGCCTTTGAAGCAATGTTCAACTGGGGTTTATACAAGCTCTCTTTCCTTAGGGACCTCACCATCATAGGTGGAAGTTTGTTTATGTCACCCGGAAAGCTGGGGAAAATGCTTCCCTCCTCCCTAACTAGCCTCACTATTCAAAGTTTTCCACACTTGAAAGACCTGTCATTAGAGGACTTCCATAAACTTACCTCTTTATCTAGCCTAACCCTAAGAGATCTCTCAAATCTAAAATTCCTACCATTCTTGGGGTTTAAATACCTTACCTGTCTTGAAGAACTTTCTATTTATAACTGTCCCAAGCTATCATGTTTACCAAAAACTGGCCTTCCTTCGTCACTTTTGGAGCTATATATACAAGACTGCCCTATTCTGAAAGAACAGTGCAGCAAAGGAAAAGGGAAAGACTGGTTGAAGATTGCTGACATCCCTTATGTTGAGATTGATGGAAAACTTATCTATGACTCAGATTATGAGGATTGA 4287 0.3879 MPVEEVFLSAFLQVLFDRLATKNVIEVILAGDKGKILKKFQKTLLLIKAVLNDAEDKHVKNDAVRMWLVDLKDVAFDAEDILDKFATEVLKKRLESISQSQVQTTFTRVCNLIPTSLNPSNLMFDVEIELKIKAITERLETLANERHELGLSEVAARCSFKINETSSTVNESYIYGRDKDKDKIIQLLMENRPSHGDEVLVIPIVGMPGIGKTTLAQVVFNDDKVNTHFELKAWVSIPDDFDVKVVTGKILESATSITCDFNNLHQLQIKLKAALSGKKFLIVLDDVWNKNYNEWIKLVAPFRGAARGSSVIVTTRSAEVANMMGTVECHYVNQLSDEDCESVFMQHAFRSKTIDANHAFTELGKKIARKCKGSPLTATTLGGNLSSQRDVREWENVMDFEIWDLAVEESNILQTLRLSYNQLPPYLKPCFAYCSILPKGFEFEEKELVLLWMAEGLLEQQSQKQLEDIGHEYFQELLSASLFQRSTSNRSLYVMHDLINDLAQWVAGESCFKLDNHVHPHRRKKKKISKRTRYVSYIGGEYDGIQMFQALKEAKSLRTFLPLKHSRLEEWSYITNHVPFELLPELRCLRALSLSGYFITKLPNSVSNLNLLRYLNLSWTDLRQLPESICSLCNLQTLLLRDCFNLEQLPSNLSDLINLRHLDITRAHSLTDMPHGIGKLTHLRTLTDFIVGSSGIGELMKLINIQGVLSVSRLENVSDTLEASGAMLNKKVGIDVLKLKWSFMNNQSHIERAKDVLHMLKPHKGLAKLTIKCYGGTSFPKWIGDPSYKSLVFLKLKDCANCTSLPALGNLHALKELYIIGMKEVCCIDGGFYGNACFRPFPSLEKLHFMDMEKWENWFLSDNNEQRDIFSSLQQIFIVRCPKLLGKLPENLPSLKHVLVKECEQFLVTIATLPMLYTLEIEGCKGLVLNCANEFNSLNSMSVSRILELTLLMERLVEAFKNVEELKIVSCALDEIVLNDLWGNEVWLEKNPHVFSSKLKLIEIRNCNVMRSVPKVLMVNSHCLERLYICNCDSLVFITMDQFPPSLKSLEISNCKNLRCLLENGTSSSSSIIMHDDNVQQSGRNHRIISHLEYVYIGWCPSLTCISRSNELPESVKLLFIWNCLELSCLSMKDQLPKSLEKLEIQNCPKLKSIANRLHRNTSLESIQIWNCENLKSLPKGLHFLVNLKEIKIIGCPNLVSFPEEGLPTSSLTELCIMGCEKLVALPGCLHDLDSLKELEIGYCPSVQYFPEINFPDNLTSLWINDHNAFEAMFNWGLYKLSFLRDLTIIGGSLFMSPGKLGKMLPSSLTSLTIQSFPHLKDLSLEDFHKLTSLSSLTLRDLSNLKFLPFLGFKYLTCLEELSIYNCPKLSCLPKTGLPSSLLELYIQDCPILKEQCSKGKGKDWLKIADIPYVEIDGKLIYDSDYED 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01757 1428 PANTHER DISEASE RESISTANCE PROTEIN RP 1209 1378 IPR044974 GO:0006952
Cca04g01757 1428 PRINTS Disease resistance protein signature 371 385 - -
Cca04g01757 1428 PRINTS Disease resistance protein signature 201 216 - -
Cca04g01757 1428 PRINTS Disease resistance protein signature 911 927 - -
Cca04g01757 1428 PRINTS Disease resistance protein signature 274 288 - -
Cca04g01757 1428 CDD AAA 175 287 - -
Cca04g01757 1428 Gene3D - 426 504 IPR036388 -
Cca04g01757 1428 Gene3D Ribonuclease Inhibitor 513 689 IPR032675 -
Cca04g01757 1428 Pfam Rx N-terminal domain 7 97 IPR041118 -
Cca04g01757 1428 Gene3D Ribonuclease Inhibitor 1155 1254 IPR032675 -
Cca04g01757 1428 Gene3D Ribonuclease Inhibitor 693 905 IPR032675 -
Cca04g01757 1428 Gene3D Ribonuclease Inhibitor 906 1089 IPR032675 -
Cca04g01757 1428 Gene3D Ribonuclease Inhibitor 1255 1401 IPR032675 -
Cca04g01757 1428 Pfam NB-ARC domain 178 401 IPR002182 GO:0043531
Cca04g01757 1428 Gene3D - 12 118 - -
Cca04g01757 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 434 IPR027417 -
Cca04g01757 1428 Gene3D - 159 329 IPR027417 -
Cca04g01757 1428 PANTHER OS06G0667900 PROTEIN 1087 1207 - -
Cca04g01757 1428 PANTHER OS06G0667900 PROTEIN 1209 1378 - -
Cca04g01757 1428 PANTHER OS06G0667900 PROTEIN 9 1067 - -
Cca04g01757 1428 CDD RX-CC_like 29 144 IPR038005 -
Cca04g01757 1428 SUPERFAMILY L domain-like 1091 1408 - -
Cca04g01757 1428 Gene3D - 334 424 IPR042197 -
Cca04g01757 1428 PANTHER DISEASE RESISTANCE PROTEIN RP 1087 1207 IPR044974 GO:0006952
Cca04g01757 1428 PANTHER DISEASE RESISTANCE PROTEIN RP 9 1067 IPR044974 GO:0006952
Cca04g01757 1428 SUPERFAMILY L domain-like 494 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01757 Cca-Chr4 31275959 31280712 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01757 198 830 WRKY Transcription Factor Family AT5G45050 22.455 4.90e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01757 - - ccaj:109818945 2294.62