Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01756 ATGTCTGATTTTTTTGAAAGTCTTAGCCCTGACCCAAATATGGATCTTCGTGCTTTTGCTAGTTCACCTGCATGTCTGACAAATCTTGGTGCAACATACAATGATGTCCAGCAGGATAGCCACAAGTTCCTGACATTGCTTCTGTCGTTACTCAAGTGTTGCTTGAGCCATTCTCAAATTGCTAAGGCAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGCGTGTCTCATGTGACAACGTGTTCACAATGTGGAAGAAACTTTGAAGCTTCTTACAAACTAGAAGACTTCTATGGGTTAGAGCTGAATATCAAGGGATTGAAAGGTTTAGATGAGAGCCTAGATGATTACCTTGCTATTGAAGAGCTTCATGGAGACAATCAATATTTTTGCCAGGCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGTGTTCACAATGTGGAAGAGACTCTGAAGCTTCTTACAAACTGGAAGACTTCTATGGGTTAGAGTTGAATATCAAGGGGTTGAAAGGTTTAGATGAGAGCCTAGATGATTACCTTGCTATTGAAGAGCTTCATGGAGACAATCAATATTTTTGCCAGGCATGTAAAACAAGAGTTGATGCTACTCGCAGCATCAAGCTGTGTACATTACCTGATGTACTTAATTTTCAACTTAAACGTTATGTATTCCTCCCACAGGAGGTATTACTATTAGATTGA 711 0.398 MSDFFESLSPDPNMDLRAFASSPACLTNLGATYNDVQQDSHKFLTLLLSLLKCCLSHSQIAKARTIVQDLFRGSVSHVTTCSQCGRNFEASYKLEDFYGLELNIKGLKGLDESLDDYLAIEELHGDNQYFCQACKTRVDATRSIKCSQCGRDSEASYKLEDFYGLELNIKGLKGLDESLDDYLAIEELHGDNQYFCQACKTRVDATRSIKLCTLPDVLNFQLKRYVFLPQEVLLLD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01756 236 Gene3D Cysteine proteinases 144 232 - -
Cca04g01756 236 Gene3D Cysteine proteinases 3 143 - -
Cca04g01756 236 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 146 231 - -
Cca04g01756 236 Pfam Ubiquitin carboxyl-terminal hydrolase 35 227 IPR001394 GO:0004843|GO:0016579
Cca04g01756 236 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 33 145 - -
Cca04g01756 236 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 236 IPR028889 -
Cca04g01756 236 SUPERFAMILY Cysteine proteinases 143 228 IPR038765 -
Cca04g01756 236 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 146 231 - -
Cca04g01756 236 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 33 145 - -
Cca04g01756 236 SUPERFAMILY Cysteine proteinases 34 145 IPR038765 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01756 144 225 Miscellaneous Gene Families AT4G31670 34.940 9.75e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca04g01756 UCH 3.3e-07 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01756 - K11858 gmx:100795556 197.208