Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g01719 | ATGGGTCCCAGAAGGAGGAATTGGCGGAGGAAGAAAGCAGTTCCCGTGGATGCAATCCCCGCTCAGCAAGGAACACAGTCTGTGGATTTTGATGCTTTGTGTGAGGCCAATGAGGGGAAAGTAATGAACTTGACTGAGAACAATGATGTTGGGGGAGGTTTTTCTTGTGTTCAGGAAGGTAAGAAGTGTGGTAGTAAGAGTAAAGAGGAGATGGAGGGGAGGGCATTAGAGGGTAATTTGGAGGAGGAGAAGAAAGATGCACAAGACGAAAGCCACGGTAGAAATGGTGGTGGGGTTGGAGGTTCTCCTTCTGTCGAGGTGGTTGTGAAGAAGAAGCGTGGCAGAAAAAGTAACAAGGAAAAGGAGGAGATGATGATGTTGGAGGGAAATTTGTTGAAGAAAGATAGTAATGAGGATAGCCACGATGTAAAGGGTGTTGGAGGTTCTTCTTCTGTTAAGGAAGTGAAGAGGAAGCGTGGGAGGAAAAGTAAAAAGGAGTTAGAGAAGAAAGATGCTCAAAAGAAAAGCCACGATGAAAAGGTTGTCGGAGGTTTTTCTTCTGTTAAAGTGAAGAAGAAGCCTGGAAGAAAAAGTATAAAGGAATTGGAGGAGATGATGTTGGAGAAGAGAGATACTCAAGACGGTAGCAACGGTGAAAATGGTGTTGGAGGTTCTTCAGTCAAAGATGTGATGAAGAATAAGCGTGGCAGAAAAAGGAAAACGGAGGAAGATGAGATGAAGATGTTGGAGAAGAAAGATACTCAAGATGATAGCCACGGTGTAAATGGTGTTGGAGGTTCTTCTTTTGTTAAGGAAGTGAAGAAGAATAAGCGTGGCAGAAAAAGTACCAAGGAGAAGGAGGTGGAGGATATGGAGCAAAAGATGTCAGAGGGCAATTTGTTGGAGAATGAGGACACTCAAGACAAAAACCACGGTGAAAAGGGTGGGGTTTCTGAGCAAAGAGGCGGTAGAAAGAGAAAGATTCTTAAGAAAGATGACTGGGAGTTTGAAATGCCTGCGGATTCTTCAGGAAGGGGCAGAAAATATAGCCTAAGGGGCGGTAAGGTCAATGAAGAAGAGGAGGAAGAAGAACCAAAACTCAACAAGAAGGATTCTAAGTGGATTGAAGAGGTGTCCTTAATGTGTCATCAGTGTCAGAGAAATGACAAAGGCGAGGTTGTGAGGTGCACACTTTGTAAGAGGAAGAGATTTTGCCTACCCTGTTTAAAAAATTGGTATCCTCATTTGAAAAATGATGATGTTGCCGAGGCATGTCCTGTATGCCGTGGTAATTGCAACTGCAAAGCATGTCTGAAATCTGATGCCCTTATTAAAAAAATGAGGGAAAAAGCAGCAGAGACCATTGAAGACGAGAAGGTTGAACTCTCTATGCATTTGCTGCAAGTACTTCTTCCGTATTTAAGGCTGTTGGAAGAAGAACAGATGATTGAGAATGAGACAGAAGCGAAAATACTGGGGCTCTCAGTCTCAAAGCTGAATATAGTAAAGGCAGATTTCTCTCCAAAGGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGCACAAAGTGCTCCTTTGATCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAGAGGGCAGCTTATAGGGGGTGCAGATCCATTTGCATTGCAGTTTGTCTGGAAAGGTAAGAATTACTTGCATGGTGGAAAAGAAGATAAAAAGGCAGACCAAAATACACCAAATGTTAATGCTAAGCCTGTAGTTCGTGAATGGTCAAGATCTGGGTGGCATGCAGAAAGTGATGGGAGCATTCCTTGTCCAAAAGCCAATAGTGAATGTAACCATGGTTCTCTTGAACTGAGAAGCATATTGGGTCAACATTTTATCTCTGAGTTAGTGGGTAAAGCGAATGAACTAGCTCAAGCATACAAGCTTCAAGATGTAGTTAAGACCCCTGACAACATGTGTTCGTGTTTGAGTCATGATGAAAATGCAGATGTTGGATATAATAATACGAGGAAGGCTGCTTCTCGTGAAGATTCCTGTGACAACTATTTATATTGTCCTCGGGCTGTAGATCTACAGGACGAGGATGTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTTGTTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATGCCGTCAGATGACTTTTACCAAGCGTGAACACCATTTGGATGTTAAGGCCATTGATTGCTTAGATTGGTGTGAGGGAGAAATTAATATCCACCAATTCTTCACTGGGTATACAAAAGGTCGTGAGGATTGGCGTTCTTGGCCTCAGATACTGAAATTAAAAGATTGGCCTCCTTCTAATTTATTCGAGGAACGTCTGCCTCGTCATTGTGCTGAGTTTATATCTTTCTTGCCCTTCAAGGAATATACTGATCCTCTCGGAGGTTCTCTTAACCTTGCTGTGAGGTTGCCTAAAGATTGTCTGAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTTCTCAGGAGCTTGGACGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCCGATGCAGTAAATGTGCTGACTCATATATCTGAAGTGAAATTGGATTCAAGGCAACTTACTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAGCAAGACAAAAGGGAACTTCTTGGTGATAATCTGGATGGAGAATCTAATGTTGACTTGCTTAATAATTCATCTTCTACCATAAATGATTTAGACAAGCAAAATACTGACCAAGTCATGGAACATGGAGGTGGATTTGGTGCTGGGATAGAAGTTGATCAATTTCAGCAGCCCTCTGGTGGTAATGAGGTTGCCATTGCTAATGAAGATGGTCTTTCATGTGGATCAGAACTCAAAGAGGTTGAGAAAGTGAAAGTAAAACAAGAAAGTGATCTGTTATTTGCTGGGGATGCTTTAGAAGGTGCTCTCTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTGTCCTATAACACAGGTTATTCATCCCATCCATGACCAAACCTTCTATCTGACCATGGAGCATAAGAGGAAGCTTAAGCAGGAGTATGGAGTTGAGCCCTGGACTTTTATTCAAAAGGTAGGTGATGCTGTTTTCATTCCAGCTGGTTGTCCTCATCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCATTGGATTTTGTCTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTGGCAGAGGAATTTCGCACACTTCCAATAAACCACATGTCTACGGAGGACAAATTGGAGAGATCCAATTCTCACCATGATGTTTAG | 3408 | 0.4269 | MGPRRRNWRRKKAVPVDAIPAQQGTQSVDFDALCEANEGKVMNLTENNDVGGGFSCVQEGKKCGSKSKEEMEGRALEGNLEEEKKDAQDESHGRNGGGVGGSPSVEVVVKKKRGRKSNKEKEEMMMLEGNLLKKDSNEDSHDVKGVGGSSSVKEVKRKRGRKSKKELEKKDAQKKSHDEKVVGGFSSVKVKKKPGRKSIKELEEMMLEKRDTQDGSNGENGVGGSSVKDVMKNKRGRKRKTEEDEMKMLEKKDTQDDSHGVNGVGGSSFVKEVKKNKRGRKSTKEKEVEDMEQKMSEGNLLENEDTQDKNHGEKGGVSEQRGGRKRKILKKDDWEFEMPADSSGRGRKYSLRGGKVNEEEEEEEPKLNKKDSKWIEEVSLMCHQCQRNDKGEVVRCTLCKRKRFCLPCLKNWYPHLKNDDVAEACPVCRGNCNCKACLKSDALIKKMREKAAETIEDEKVELSMHLLQVLLPYLRLLEEEQMIENETEAKILGLSVSKLNIVKADFSPKERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRRGQLIGGADPFALQFVWKGKNYLHGGKEDKKADQNTPNVNAKPVVREWSRSGWHAESDGSIPCPKANSECNHGSLELRSILGQHFISELVGKANELAQAYKLQDVVKTPDNMCSCLSHDENADVGYNNTRKAASREDSCDNYLYCPRAVDLQDEDVRHFQWHWEKGEPVVVSNVLECTSGLSWEPLVMWRACRQMTFTKREHHLDVKAIDCLDWCEGEINIHQFFTGYTKGREDWRSWPQILKLKDWPPSNLFEERLPRHCAEFISFLPFKEYTDPLGGSLNLAVRLPKDCLKPDMGPKTYIAYGFSQELGRGDSVTKLHCDMSDAVNVLTHISEVKLDSRQLTAIEKLKQKHFEQDKRELLGDNLDGESNVDLLNNSSSTINDLDKQNTDQVMEHGGGFGAGIEVDQFQQPSGGNEVAIANEDGLSCGSELKEVEKVKVKQESDLLFAGDALEGALWDIFRRQDVPKLQEYLKKHFREFRHVHCCPITQVIHPIHDQTFYLTMEHKRKLKQEYGVEPWTFIQKVGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLAEEFRTLPINHMSTEDKLERSNSHHDV | 1135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g01719 | 1135 | Coils | Coil | 274 | 294 | - | - | |
| Cca04g01719 | 1135 | ProSiteProfiles | JmjC domain profile. | 820 | 1113 | IPR003347 | - | |
| Cca04g01719 | 1135 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE | 110 | 1127 | - | - | |
| Cca04g01719 | 1135 | MobiDBLite | consensus disorder prediction | 282 | 342 | - | - | |
| Cca04g01719 | 1135 | PANTHER | JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN | 110 | 1127 | IPR045109 | GO:0032454|GO:0033169 | |
| Cca04g01719 | 1135 | Coils | Coil | 155 | 175 | - | - | |
| Cca04g01719 | 1135 | MobiDBLite | consensus disorder prediction | 108 | 142 | - | - | |
| Cca04g01719 | 1135 | MobiDBLite | consensus disorder prediction | 62 | 92 | - | - | |
| Cca04g01719 | 1135 | MobiDBLite | consensus disorder prediction | 236 | 258 | - | - | |
| Cca04g01719 | 1135 | Pfam | JmjC domain, hydroxylase | 1000 | 1096 | IPR003347 | - | |
| Cca04g01719 | 1135 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Cca04g01719 | 1135 | CDD | cupin_RmlC-like | 1037 | 1097 | - | - | |
| Cca04g01719 | 1135 | MobiDBLite | consensus disorder prediction | 196 | 215 | - | - | |
| Cca04g01719 | 1135 | Gene3D | Cupin | 683 | 1122 | - | - | |
| Cca04g01719 | 1135 | SUPERFAMILY | Clavaminate synthase-like | 696 | 1127 | - | - | |
| Cca04g01719 | 1135 | SMART | cupin_9 | 801 | 1113 | IPR003347 | - | |
| Cca04g01719 | 1135 | MobiDBLite | consensus disorder prediction | 165 | 186 | - | - | |
| Cca04g01719 | 1135 | MobiDBLite | consensus disorder prediction | 351 | 369 | - | - | |
| Cca04g01719 | 1135 | MobiDBLite | consensus disorder prediction | 59 | 369 | - | - | |
| Cca04g01719 | 1135 | Pfam | Zinc-finger domain of monoamine-oxidase A repressor R1 | 378 | 443 | IPR018866 | - | |
| Cca04g01719 | 1135 | ProSiteProfiles | Zinc finger RING-type profile. | 382 | 429 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca04g01719 | Cca-Chr4 | 29332548 | 29342676 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Jumonji | Cca04g01719 | JmjC | 6.4e-14 | CL0029 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g01719 | K15601 | - | gmx:112997634 | 1524.61 |