Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01699 ATGCAACGATCAATTGTAGATACTGCTTATATATTTAATTCCATGGACTTGGGTCACAACAATAATAGAGAGACCAACGATAGACCTTTAGAATTAACTGCAGATGATGTTTATATCCTTGAGTCAATGTTAGGTCCAAATCACAATGATGATGATGATTTTGAAGTGCCTCCTGCAAATCAAGACTCTATTAAAAATCTTGAAGTTGTCACAATTCAAGAAAATGCAAACAAACCTATGGATTCACCATCATGTTCCATATGCCTAGAGGTACTTTCCAATGGATCAAAAGCAATTTGCATGCCTCAACCTTGTTTTCATATCTTTCATCAAAATTGCATTGTAAAGTGGCTCAACATTAGTGGCACATGTCCTTTGTGTCGTAGGACTATCTAG 396 0.3586 MQRSIVDTAYIFNSMDLGHNNNRETNDRPLELTADDVYILESMLGPNHNDDDDFEVPPANQDSIKNLEVVTIQENANKPMDSPSCSICLEVLSNGSKAICMPQPCFHIFHQNCIVKWLNISGTCPLCRRTI 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01699 131 SMART ring_2 85 127 IPR001841 -
Cca04g01699 131 SUPERFAMILY RING/U-box 84 131 - -
Cca04g01699 131 ProSiteProfiles Zinc finger RING-type profile. 85 128 IPR001841 -
Cca04g01699 131 SMART ringv_2 84 128 IPR011016 GO:0008270
Cca04g01699 131 Pfam Ring finger domain 84 128 IPR001841 -
Cca04g01699 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 131 IPR013083 -
Cca04g01699 131 PANTHER SI:CH211-59O9.10 30 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01699 Cca-Chr4 28278267 28278662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01699 43 128 C3H Transcription Factor Family AT1G14200 36.957 2.36e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01699 - K22378 pvu:PHAVU_007G098000g 87.4261