Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01690 ATGCTTATTCATTTCAAAGGTTTGTATCTCTGTTCACATTGTTTCATTCACTTTTCAGTTTCAATTCAAGAATACTTAGAGATGAGTTCTTCTGAGAATAAGGGAAAGAAGGACAAGCAAATACTTGTATATCAGAGAAGAAACAAAGGAACTGTTTCTGAGAAAAAAACATTACCCCACCCCACTGAAGACATTTCTGTACCATCAGAAGGTTTTGGTAACTATGAAGGCAAGGTGAATCGAGAGATAGGAGAAGATGGAAGTTATTATGAGTGTGAAATTTGTTTTGATGGCGGAGACTTGCTCTGCTGTGATACTTGTCCTCGTGCTTATCACCTTAAGTGTCTCTCTTTAGAGTCTGTTCCCGAAGGAAAATGGCAATGCTCACAATGTGTGCTTGCTAGTAATTCAAAACCCAAAGACAAGAAATTGAAGCGCATGAAAGTGAAACACAACAAGAAAGTGAAGCATGAAAAGAATGAGTAG 486 0.3765 MLIHFKGLYLCSHCFIHFSVSIQEYLEMSSSENKGKKDKQILVYQRRNKGTVSEKKTLPHPTEDISVPSEGFGNYEGKVNREIGEDGSYYECEICFDGGDLLCCDTCPRAYHLKCLSLESVPEGKWQCSQCVLASNSKPKDKKLKRMKVKHNKKVKHEKNE 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01690 161 SUPERFAMILY FYVE/PHD zinc finger 62 133 IPR011011 -
Cca04g01690 161 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 68 154 - -
Cca04g01690 161 MobiDBLite consensus disorder prediction 142 161 - -
Cca04g01690 161 Pfam PHD-finger 92 132 IPR019787 -
Cca04g01690 161 PANTHER PROTEIN CHROMATIN REMODELING 4 68 154 - -
Cca04g01690 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 161 IPR013083 -
Cca04g01690 161 SMART PHD_3 91 132 IPR001965 -
Cca04g01690 161 ProSitePatterns Zinc finger PHD-type signature. 92 131 IPR019786 -
Cca04g01690 161 ProSiteProfiles Zinc finger PHD-type profile. 89 134 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01690 Cca-Chr4 27972371 27978407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01690 92 131 PHD Transcription Factor Family AT2G36720 60.000 8.69e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca04g01690 PHD 1.6e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01690 - - lja:Lj0g3v0315929.1 105.916