Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01683 ATGGCATTAAGGGCGATGACTGGGTGGACGTTGCGTATCTTGATTGCCATACTGGAGAATCTTTCTATGATTGCTCGAAGGGGTTCAGCGTCCCCTTGCCTAAACTTAGCAACGCCACTGTTGAGGAGATTCCAGGGTAATTCTTTTGAAGGCCCAATACCGTTGTCATTTTCCAATTTGACTTCTTTGATAGAGTTGAGAATAAGCTGTTTATTAAATGGGAGCTCTTCAAAGCTGGCATTTTTGAGGAATTTGAAGTCTTTGAATATTTTAGAACTGAGGAATAATAATATTTCTGATTCAATGCCATCGTTTATCGGACATTTGCAAGATTTAACCCAGTTGGATTTAAGCTTCAATAATATCACAGGACACATTCCGGACTCAATTTTCAATCTGGGTTCACTTTCTTACTTGTTTCTTGGAAACAACAAACTCAGTGGTACCCTTCCTACCCAGAAAAGTGAGTTTCTTCTCAACATAGACTTGTCATACAATAATTTATCAGGGACTCTTCCTTCTTGGGTAAACCAACAAAATTTACAACTCCATATGCATATTTTTCTAATTACCAAACATGTTTTCTTTTCTAGATTACCTTCTGGACTCGACTGTTTACAAAAAAATTTCCCTTGCAACCGTGGTATTGGAAGATATTATGATTTTGCAATAAAGTGTGGTGGTCCTCAAATTACTTCTTCAAATGGAATTGTGTTTGAAATGGACAACCAAACACTAAGTCCAGCTACCTACTTTGTTAGTGATACAAAGAGATGGGGTGTTAGTAATGTAGGATTATTCACTGGGAGCAACAACCCTCATTACAAAAGTTCTATTTCTAATCAGTTCACTAACATTGTGGATCCAGAGCTCTTCCAGACAGCTCGAATCTCTGCTTCATCACTTCGATATTATGGCCTAGGGCTGGAAAATGGTTTCTACAACATCACCCTCCAATTTGCAGAAATAACTATTTTGGATAATTCGGAATGGAAAAGTCTTGGGAGAAGAATCTTTGATATTTATATTCAGGGGAGTCTTGTTTTAAAGGACTTTGATATAAAAAGGGAGGCTGGGGGCATCTCTTTCAGTGCTGTCCAAAAGAAATTTAGAATTGAAGTGTTAGAAAATTATGTAGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCAGCTCAAGGTACTTATGGTCCCTTGATTTCAGCCATTAGTGCTATCCCAGATTTCACGCCTACTGTTAGTAACAAACCTCCAAGTAGTAAAAGGAATAATGTTGGTGTAATCGTGGGAACAGTTGTTGGAGTTGTAAGCTTTCTATTTGTTCTTGCAATCTTCTATATCATTCGTAAACGAAAACACCATGACGATAATGAAGAGCTTCTAGATATTGACACAAAGCCATACATTTTTAATTATTCTGAGTTAAAGAATGCTACTGATGACTTTAATCTTGATAACAAGCTTGGAGAAGGAGGTTTTGGGCCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAACTATCTGTACAATCCAATCAAGGAAAGAGTCAATTCATAACTGAGATTGCCATTATCTCTACTGTGCAACATCGTAATCTTGTAAAATTACATGGATGTTGCATTGAAAGAAATAAAAGACTTCTAGTCTATGAGTATCTTGAAAATAGGAGTCTTGATAAAGCATTATTTGGAATTTGTTTAAATCTCAATTGGTCTACACGTTATGATATATGCTTGGGTGTAGCGAGAGGTTTAACTTATCTACATGAAGAATCTCGAGTCCGTATTGTACATCGTGATGTGAAGTCTAGTAATATTCTTCTTGATCATGAGCATATTCCAAAAATATCTGATTTTGGTTTGGCAAAATTATATGATGACAAAATGACCCATATAAGCACTCGCGTGGCTGGGACAATTGGATATCTTGCCCCGGAATATGCCATGCGTGGACATCTAACAGAAAAAGTTGATGTATTTTCCTTTGGTGTCGTGCTTTTGGAGATAGTTAGTGGAAGGTCAAATTCTGATTCAAGTTTGGAAGGAGATAAGATGTATCTTCTGGAATGGGCCTGGCATCTACACGAAAACAACAATGTACTTGATCTTGTAGATCCTAGATTATCTGATTTTAATGAGGAAGAAGTAAAACAAGTTGTGAGAATAGGTCTCATGTGCACTCAAACATCACCAACATTACGACCATCAATGTCCCGTGTGGTAGCAATGCTTTTAGGAGATATTGAAGTGAACACTGTAACATCGAGGCCTGGATACTTGACTGATTGGAAATTTGATGATGTTACTAGCTTCATGACTGAGGTTGCAACCAAAGGATCAAACACAAGTTTTTTCAATTCTTCAGCAAGTACCAGCATAGTGGGTGGTGCAAAAATTGATGATTCTCAACCTATCCTTCGTGAGAATCTAAGTGGAGGTAGGTAA 2469 0.3755 MALRAMTGWTLRILIAILENLSMIARRGSASPCLNLATPLLRRFQGNSFEGPIPLSFSNLTSLIELRISCLLNGSSSKLAFLRNLKSLNILELRNNNISDSMPSFIGHLQDLTQLDLSFNNITGHIPDSIFNLGSLSYLFLGNNKLSGTLPTQKSEFLLNIDLSYNNLSGTLPSWVNQQNLQLHMHIFLITKHVFFSRLPSGLDCLQKNFPCNRGIGRYYDFAIKCGGPQITSSNGIVFEMDNQTLSPATYFVSDTKRWGVSNVGLFTGSNNPHYKSSISNQFTNIVDPELFQTARISASSLRYYGLGLENGFYNITLQFAEITILDNSEWKSLGRRIFDIYIQGSLVLKDFDIKREAGGISFSAVQKKFRIEVLENYVEIHLFWAGKGTCCIPAQGTYGPLISAISAIPDFTPTVSNKPPSSKRNNVGVIVGTVVGVVSFLFVLAIFYIIRKRKHHDDNEELLDIDTKPYIFNYSELKNATDDFNLDNKLGEGGFGPVYKGTLNDGRVIAVKQLSVQSNQGKSQFITEIAIISTVQHRNLVKLHGCCIERNKRLLVYEYLENRSLDKALFGICLNLNWSTRYDICLGVARGLTYLHEESRVRIVHRDVKSSNILLDHEHIPKISDFGLAKLYDDKMTHISTRVAGTIGYLAPEYAMRGHLTEKVDVFSFGVVLLEIVSGRSNSDSSLEGDKMYLLEWAWHLHENNNVLDLVDPRLSDFNEEEVKQVVRIGLMCTQTSPTLRPSMSRVVAMLLGDIEVNTVTSRPGYLTDWKFDDVTSFMTEVATKGSNTSFFNSSASTSIVGGAKIDDSQPILRENLSGGR 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01683 822 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Cca04g01683 822 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 56 804 - -
Cca04g01683 822 SUPERFAMILY Protein kinase-like (PK-like) 468 780 IPR011009 -
Cca04g01683 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Cca04g01683 822 SUPERFAMILY L domain-like 44 183 - -
Cca04g01683 822 SMART serkin_6 485 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01683 822 Gene3D Ribonuclease Inhibitor 21 214 IPR032675 -
Cca04g01683 822 Pfam Protein tyrosine and serine/threonine kinase 486 752 IPR001245 GO:0004672|GO:0006468
Cca04g01683 822 Gene3D Transferase(Phosphotransferase) domain 1 561 763 - -
Cca04g01683 822 Gene3D Phosphorylase Kinase; domain 1 447 560 - -
Cca04g01683 822 Pfam Malectin domain 221 406 IPR021720 -
Cca04g01683 822 Gene3D - 220 410 - -
Cca04g01683 822 ProSiteProfiles Leucine-rich repeat profile. 111 133 IPR001611 GO:0005515
Cca04g01683 822 CDD STKc_IRAK 491 752 - -
Cca04g01683 822 ProSiteProfiles Protein kinase domain profile. 485 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01683 822 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 56 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01683 Cca-Chr4 27558314 27602554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01683 43 822 Receptor kinase-like Gene Family AT1G56120 60.152 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01683 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01683 - - ccaj:109788185 1571.6