Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01682 ATGAATGAAGAAAATAGGAATGTTAATGCATGTCCTCTATGTAGGCATCAACGTAAGAGACATGATGATAACTGTGAGTATGGACAATACTTTCCTAATAATAGGTCAGAAGACTTTGAGAGTGCTTGTAGGCTTTTTGGTTTGTCTAACTTGCTTAGATTAGTGCGTTGTGCCGAACCATCTCAAAGACAAGTTGTTGCATATTCCATTTTAAGGGAGGCAAACATTTGGGAAAATGACCCAATCCGTGGTGCCTTTGGTCATGTAACAAATCTATTGTCTGAAATTCAATTTTTTGATGAGGCACTAGAACTTGTAAACAAATCACTTGAATATTATCGAGATCAAGCGAGCCAAGAAAACCCAATCTCACAAATGGGTATTGCATCTTCTTCCAACATCCCACAACATAGTACCCAACTAGGAGGCATGAGCACACAAATATCAAGCCTCGATGGAGCTGATATCTTTATGAGTTCATTAGAGAAAAGCAACTCAAGTACTGTTGCATCTAAGGAGAAGGAGGTTGTTTTAAAAGAGAAAGATTCAAAGGTTGATGACAAGGAGCCAGAGAATACTTCTAACAAAGATTCCTAA 597 0.3802 MNEENRNVNACPLCRHQRKRHDDNCEYGQYFPNNRSEDFESACRLFGLSNLLRLVRCAEPSQRQVVAYSILREANIWENDPIRGAFGHVTNLLSEIQFFDEALELVNKSLEYYRDQASQENPISQMGIASSSNIPQHSTQLGGMSTQISSLDGADIFMSSLEKSNSSTVASKEKEVVLKEKDSKVDDKEPENTSNKDS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01682 198 MobiDBLite consensus disorder prediction 162 198 - -
Cca04g01682 198 MobiDBLite consensus disorder prediction 173 198 - -
Cca04g01682 198 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cca04g01682 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25-LIKE 9 192 - -
Cca04g01682 198 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 192 - -
Cca04g01682 198 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01682 Cca-Chr4 27488616 27489620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01682 11 160 AS2 family AT3G50510 29.412 5.22e-21 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca04g01682 LOB 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01682 - - gmx:102660641 202.216