Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01660 ATGACACAGCCATccgcgcctccgcctccgcctccaccgccgctagcgccaccgcaaccgacgactccgccgccgccgccgccgcctcagccgaccgAGAGCGTCCGCGTGCGGTGCGCCGGCTGCCGCATGATCCTCTCCGTGGCCCCCGGCCTGACCGAGTTCGCGTGCCCTACCTGCCGAATGCCGCAGATGCTCCCGCCGGAGCTCATGCCTAAGGCGGACGACACGGCCACGCCGCCGCGGGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCATCGGCTCCGGCGCACGGCATTGATCCAACTAAGATCCAGCTTCCCTGCGCCTCGTGCAAGGCCATCCTCAACGTCCCTCACGGCCTCGCGCGCTTCTCTTGCCCTCAGTGCCACGTTGACCTCGCCGTCGATGTCTCCAAGGTCAAGCAGTTCTTCCCCGTCGCGCCGCCGCCCGAAGAAGTTAACGAGGTTGCTGTTGAAGTGGAGCGGGATGAAGATGAAGGTGGCATGGTTGGAGAGACATTTACAGATTATCGCCCACCAAAAGTATCTATTGGACCTCCTCACCCAGATCCTGTTGTCGAGACATCTTCCTTGTCTGCAGTACAGCCACCTGAGCCAACTTATGATCCAAAAATTAAAGATGATTTGGAAAGTTCAAAGGCTTTATCATGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACACCTCCCAAATGGATCTAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCATCACAGAAGGAGAAAAGCATTATGGGTTTCTGTTGGTTCTGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGTGGGTGCGGCATGCATTGAAGTGCATCCTTTGAACAAACTGCCTTACTCTAAGCTTGATTCGAAGTCTGTTGGGGTCAAGGAGGGAGTTATTTTCTCGACGTACAATAGCCTCATAGCATCTTCTGAGAAAGGCCGTACTCGTCTCCAGCAGCTTGTACAGTGGTGTGGACCAGGGTTTGATGGTCTTATAATTTTTGATGAGTGTCACAAGGCAAAAAATTTGGTCCCTGAATCTGGTAGTCAACCAACACGAACCGGAGAAGCAGTGCTTGATATCCAGGATAAACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCGACTGGAGCATCTGAGCCGCGCAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACTTCATTTGCTGATTTCCGTGAATTTCTAGGTGCTCTTGACAGAGGGGGTGTTGGAGCTCTTGAATTAGTTGCCATGGACATGAAAGCAAGGGGTATGTACTTATGTCGGACACTTAGCTATGAGGGTGCAGAGTTTGAAGTTATTGAAGCACCACTAGAAGAAAAAATGATGGAAATGTATAAAAAAGCTGCAGAATTTTGGGCTGAACTACGAGTAGAATTGCTGTCTGCCAGTGCTTTCCTAAATGATAAACCTAATTCTAGTCAACTATGGCGATTATACTGGGCAAGCCACCAGCGTTTCTTTAGACACATGTGTATGTCTGCTAAAGTACCAGCTAGTGTGAGACTAGCGAAGCAAGCATTAATTGATGAAAAATGTGTAGTCATTGGTCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAGGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGTCCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCATTACCAGAAAAACCTGAACTTCTCCCAGGAGAGGATGGGGTAAAAGAGCTCCAAAGGAAGAGGCACTCTGCAAATCCTGATGTTTCAGTAAAAGGAAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGTTGAAAGTGATGAAGAATCTGAAACTGACTCTGCCATTGAATCTACCGACTCGGATGATGAGTTTCAAATATGCGAAATTTGCACTACTGAGGAGGAAAGGAAAAAGATGTTACAGTGTTCCTGCTGTGGTAAATTAGTTCATTCCACATGCTTGATGCCCCCAATTGGTGATGTGATTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCAACAAAGACAGGCCTACATAACAGAACTTCAGAAGAGGTATGATGCAGCCTTGGAACGCAAGACAAAAATATTAGAGATAATTCGTTCTTTGGATCTTCCAAATAATCCTTTGGATGATATTATTGACCAGCTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGAGCTGCTACCGGAAAGGGTGTAACTTATCAGGCTCGTAATACAAAAGATGTCACAATGGAAATGGTGAACATGCATGAAAAGCAGCTTTTTATGGATGGTAAAAAGTTAGTTGCCATTATCTCTGAAGCTGGATCAGCCGGTGTTTCTTTGCAGGCAGATAGAAGAGCTGCAAATCAGAAAAGGAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCTGACCGGGCAATTCAGCAGTTTGGAAGAACTCATCGATCGAATCAAGCTTCAGCACCAGAATACAGGATACTCTTTACAAATCTAGGTGGAGAACGACGATTTGCATCAATTGTTGCCAAGAGATTAGAATCTCTTGGTGCATTGACTCAGGGTGATCGCAGGGCTGGACCTTCATTAAGTGCTTATAATTATGATAGTGCCTATGGAAAGAGGGCTCTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTGCCTGTTGTACCTCCGGGATGTTCTTCTGACAGACCAGATGCAATTCAAGATTTTATTTTGCAGGGAAAAGCTGCTCTTGTATCTGTTGGAATAGTAAGGGATACAGTTCTTGGTAATGGTAAAGATCTTGGAAGGTTATCTGGTCGTATTATTGATTCGGATATGCATGAAGTTGGACGGTTCCTCAACCGGATTTTGGGACTACCCCCTGATATTCAGAATGGGCTATTTGAGTTGTTTGTGAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGCAACCTTGACACTGGCATTGTTGACTTGAAAGCTAATGTAATTGAACTGCAAGGGACTCCAAAGACTGTTCATGTTGATCAGATGACTGGGGCTTCCACAGTTCTGTTTACATTTGTCTTGGATCGTGGGATCACATGGGAGTTGGCAAGTACGATGCTGAATGAAAAGCAGAAGGATGGGCTTGGTTCATCCAATGATGGATTTTATGAGTCAAAGCGGGAGTGGTTGGGAAGACGTCACTTCATTTTAGCATTTGAAAGTTCTGCTTCGGGTATGTATAAGATAGTACGCCCCCCTGTTGGAGAATCAAACCGGGAGATGCCTCTGTCTGAATTAAAAGGTAAATATAGAAAAATTTCATCTTTAGAGAAGGCTCAATCTGGTTGGGAAGAGGAATATGAAGTTTCATCTAAACAGTGCATGCATGGTCCCAATTGTAAGATTGGCAACTTTTGTACAGTTGGTAGAAGACTACAGGAAGTAAATGTGTTGGGTGGCCTCATCCTTCCTGTTTGGGGAGCTGTAGAAAAGGCCCTTTCTAAGCAGGCCCGCCTTAGCCATAGGAGGCTACGTGTTGTACGCATTGAAACTACTGTGGATACCCAACGTATTGTTGGGCTTCTTGTTCCTAATGCAGCAGTGGAAACTGTGCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 4113 0.4085 MTQPSAPPPPPPPPLAPPQPTTPPPPPPPQPTESVRVRCAGCRMILSVAPGLTEFACPTCRMPQMLPPELMPKADDTATPPRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSAPAHGIDPTKIQLPCASCKAILNVPHGLARFSCPQCHVDLAVDVSKVKQFFPVAPPPEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPTYDPKIKDDLESSKALSCLQIETLVYACQRHLQHLPNGSRAGFFIGDGAGVGKGRTIAGLIWENWHHRRRKALWVSVGSDLKFDARRDLDDVGAACIEVHPLNKLPYSKLDSKSVGVKEGVIFSTYNSLIASSEKGRTRLQQLVQWCGPGFDGLIIFDECHKAKNLVPESGSQPTRTGEAVLDIQDKLPEARVVYCSATGASEPRNMGYMVRLGLWGDGTSFADFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEEKMMEMYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHMCMSAKVPASVRLAKQALIDEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSANPDVSVKGRVRKVAKWQPPSDVESDEESETDSAIESTDSDDEFQICEICTTEEERKKMLQCSCCGKLVHSTCLMPPIGDVIPEEWSCHLCKEKTDEYLQQRQAYITELQKRYDAALERKTKILEIIRSLDLPNNPLDDIIDQLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRILFTNLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCSSDRPDAIQDFILQGKAALVSVGIVRDTVLGNGKDLGRLSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQMTGASTVLFTFVLDRGITWELASTMLNEKQKDGLGSSNDGFYESKREWLGRRHFILAFESSASGMYKIVRPPVGESNREMPLSELKGKYRKISSLEKAQSGWEEEYEVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQARLSHRRLRVVRIETTVDTQRIVGLLVPNAAVETVLQGLAWVQEIDD 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01660 1370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 535 IPR027417 -
Cca04g01660 1370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 1020 IPR027417 -
Cca04g01660 1370 Pfam PHD-finger 771 819 IPR019787 -
Cca04g01660 1370 MobiDBLite consensus disorder prediction 749 763 - -
Cca04g01660 1370 SMART PHD_3 771 817 IPR001965 -
Cca04g01660 1370 MobiDBLite consensus disorder prediction 184 204 - -
Cca04g01660 1370 PANTHER STRAWBERRY NOTCH-RELATED 32 1370 IPR026741 GO:0006355
Cca04g01660 1370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 755 842 IPR013083 -
Cca04g01660 1370 MobiDBLite consensus disorder prediction 1 33 - -
Cca04g01660 1370 Pfam P-loop containing NTP hydrolase pore-1 292 592 IPR039187 -
Cca04g01660 1370 MobiDBLite consensus disorder prediction 741 763 - -
Cca04g01660 1370 Gene3D - 322 522 IPR027417 -
Cca04g01660 1370 Pfam C-terminal domain on Strawberry notch homologue 860 1149 IPR026937 -
Cca04g01660 1370 SUPERFAMILY FYVE/PHD zinc finger 763 822 IPR011011 -
Cca04g01660 1370 ProSitePatterns Zinc finger PHD-type signature. 772 816 IPR019786 -
Cca04g01660 1370 MobiDBLite consensus disorder prediction 274 318 - -
Cca04g01660 1370 MobiDBLite consensus disorder prediction 64 89 - -
Cca04g01660 1370 ProSiteProfiles Zinc finger PHD-type profile. 769 819 IPR019787 -
Cca04g01660 1370 MobiDBLite consensus disorder prediction 1 34 - -
Cca04g01660 1370 PANTHER OS08G0223700 PROTEIN 32 1370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01660 Cca-Chr4 26385035 26417669 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca04g01660 AAA_34 5.7e-134 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01660 - - gmx:100808670 2177.52