Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01656 ATGTCAAAGTTGTTCTATGTTTGTTCTTGTGTCCTTATTATTTTACCTACCATGGTCTTAGGATACTCTTGTTCATGTGACATAGAAGAAGGTAACAAGAGTGATCCAAGTGAAGTCATCCACTACAAACTTGGCTCAATTGCTTCTATACTTTTTGTTGGTGCTCTTGGTGTGAGCCTTCCATTGTTGAGCAAGAAAATCCCAACACTTAATCCCAAGAATGACATATTCTTCATGATTAAGGCCTTTGCTGCAGGTGTGATCCTTACCACTGGCTTTGTCCACATACTCCCTGATGCATTTAAGAACTTGACTTCACCTTGCTTGAAGGATAACCCTTGGGGCAAGTTTCCTTTCACTGGCTTTGTTGCCATGTTGGCCTCCATAGGGACCCTTATGGTGGACTCATTTGCTACAGGATTTTACCATAGGCAACACTTTAACTCCTCTAAGCAGGTTCCTACAGCTGATGAGGAAATGGGGGATGATCATGCTGGTCACATACATGTTCATACACATGCCACACATGGCCATGCTCATGGACCATCAACTCTCTCCTCTGACGGCTCAATAATACCTGAAGTACTTAGGCAACGGATCATATCACAAGTGTTGGAGATAGGAATAGTGGTCCACTCAGTGATCATTGGAATATCATTGGGAACTACAGGGAGCATTGATACCATAAAGCCACTTCTAGTGGCCCTTTCTTTCCATCAATTTTTTGAGGGGATGGGGCTTGGTGGTTGCATCTCTCAGGCAAAGTTTAAGTCAAAGTCTATGGCAATTATGGCAACCTTTTTCTCCCTAACAACTCCATTTGGGATAGCAATTGGAATGGGAGTGTCAAATGTGTACAAAGAGAATAGTCCAGCAGCTTTGACCGTTGAAGGGATTTTTAATTCTGCTTCTGCTGGGATTTTGATCTACATGGCATTGGTGGATCTGCTAGCAGCAGATTTTATGAACCCAAGGTTGCAGAAAAATATGAAGCTCCAATTAGGGGCAAATATCTCTCTTCTTTTAGGTGTAGGTTGCATGTCTCTATTGGCCAAATGGGCTTAA 1065 0.4254 MSKLFYVCSCVLIILPTMVLGYSCSCDIEEGNKSDPSEVIHYKLGSIASILFVGALGVSLPLLSKKIPTLNPKNDIFFMIKAFAAGVILTTGFVHILPDAFKNLTSPCLKDNPWGKFPFTGFVAMLASIGTLMVDSFATGFYHRQHFNSSKQVPTADEEMGDDHAGHIHVHTHATHGHAHGPSTLSSDGSIIPEVLRQRIISQVLEIGIVVHSVIIGISLGTTGSIDTIKPLLVALSFHQFFEGMGLGGCISQAKFKSKSMAIMATFFSLTTPFGIAIGMGVSNVYKENSPAALTVEGIFNSASAGILIYMALVDLLAADFMNPRLQKNMKLQLGANISLLLGVGCMSLLAKWA 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01656 354 PANTHER METAL TRANSPORT PROTEIN 10 354 - -
Cca04g01656 354 Pfam ZIP Zinc transporter 42 351 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cca04g01656 354 PANTHER ZINC/IRON TRANSPORTER 10 354 - -
Cca04g01656 354 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Cca04g01656 354 TIGRFAM zip: ZIP zinc/iron transport family 26 354 IPR004698 GO:0005385|GO:0016021|GO:0071577
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01656 Cca-Chr4 26192811 26194683 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01656 2 354 Inorganic Solute Cotransporters AT3G12750 59.497 1.80e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01656 K14709 - gmx:100805124 558.91