Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01631 ATGGTCATAGAATTGGTTTGTGGTGCTCTTCTTTCTTCTTTCTTTCAGGTGCTATTTGATAGGCTCCTTTCTCGCCATGTTTTGGCCTACTTTGTTGGAAGTGAAGAAGCTGAGATGCTGCTGAACAAATTGAAGGCGAACTTGTTGTCCATCAATGCTGTGGTTGATGATGCGGAACAAAAGCAGTTCAGTAATTCATACGTGAAAGCATGGCTCGATGAAGTTAAAGATGCCTTGTTTGATGCCGAGGATTTGCTCGATGAGATGGACTATGAAGCCTCCAAATACAAGGTGAAAGAAGTAAGCAAATTTAAATTAAGGATCAATCAAGTCCTTCATAACCTAGAAGTTCTCTCAAGCCAGAGAGATCTTCTTGGTTTGAAAAATGCTGGTGGTGTTGAGGTTGGATCAGGGTCGAATAGTAAAGTGTCACAAAAATTGCCATCAACATCTTTGGCAATTCAAAGTGTTATTTATGGCAGAGATACTGAGAAAGATATTATCTTTAATTGGCTCAAACCTGATAATGCTAATCACCTATCAATACTTTCTATTGTGGGTATGGGCGGGGTAGGTAAGACCACACTTGTCCAACATGTATACAATGATCCAAGGGTGAAGGATGCTAAATTTAGTATCAAAGCTTGGGTCTGTATTTCAGATAATTTTGATGTTTTGAACGTATCTAGATCAATTCTTGAGGGAGTCACTAAATCAAAAGATCATAGTGGGGACCTAGAAATGATTCATGGAAGACTGAAAAAAAAACTGGTAGGGAAGAAATTTCTTCTTGTTTTAGATGACGTTTGGAATGAAAGACGAGATAAATGGGAAGTTGTGCAAACTCCTCTTAATTGTGGGGCTAAGGGAAGTGTAATTCTTGTCACGACACGCAGTGAGAAAGTTGCTTCTACAATGCGGTCAGATAAAGTGCATCACCTAAAGCAATTGCGAGAAGATTATTGTTGGGAAGTTTTTGCTGATCATGCATTGCAACATGATAATGTTCGGTTGAATGTTGAACTGAAGAAGATTGGTGTGAAGATAGTTGAAAAGTGCAAAGGATTACCTTTGGCCTTGAAAACAATCGGAAGTCTTCTACACACAAAGTCATCCATTTCAGAATGGGAAAGAGCGCTGACAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGACGGTGGACAAGTGGTGGTCGCTGTCTTTGCTTCCCATTGGAACCCTAACCCTAACCCTAACCTGCTAG 1257 0.389 MVIELVCGALLSSFFQVLFDRLLSRHVLAYFVGSEEAEMLLNKLKANLLSINAVVDDAEQKQFSNSYVKAWLDEVKDALFDAEDLLDEMDYEASKYKVKEVSKFKLRINQVLHNLEVLSSQRDLLGLKNAGGVEVGSGSNSKVSQKLPSTSLAIQSVIYGRDTEKDIIFNWLKPDNANHLSILSIVGMGGVGKTTLVQHVYNDPRVKDAKFSIKAWVCISDNFDVLNVSRSILEGVTKSKDHSGDLEMIHGRLKKKLVGKKFLLVLDDVWNERRDKWEVVQTPLNCGAKGSVILVTTRSEKVASTMRSDKVHHLKQLREDYCWEVFADHALQHDNVRLNVELKKIGVKIVEKCKGLPLALKTIGSLLHTKSSISEWERALTSXXXXXXXXXXXXXRTVDKWWSLSLLPIGTLTLTLTC 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01631 418 Pfam NB-ARC domain 162 381 IPR002182 GO:0043531
Cca04g01631 418 Coils Coil 373 382 - -
Cca04g01631 418 CDD AAA 159 276 - -
Cca04g01631 418 Pfam Rx N-terminal domain 11 103 IPR041118 -
Cca04g01631 418 Coils Coil 41 61 - -
Cca04g01631 418 Gene3D - 28 123 - -
Cca04g01631 418 PANTHER OS05G0414200 PROTEIN 35 380 - -
Cca04g01631 418 Gene3D - 139 313 IPR027417 -
Cca04g01631 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 386 IPR027417 -
Cca04g01631 418 PRINTS Disease resistance protein signature 353 367 - -
Cca04g01631 418 PRINTS Disease resistance protein signature 256 270 - -
Cca04g01631 418 PRINTS Disease resistance protein signature 182 197 - -
Cca04g01631 418 Gene3D - 316 389 IPR042197 -
Cca04g01631 418 PANTHER DISEASE RESISTANCE PROTEIN RP 35 380 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01631 Cca-Chr4 25336362 25337784 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01631 180 380 WRKY Transcription Factor Family AT5G45050 24.775 3.80e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01631 - - ccaj:109789620 730.324