Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01629 ATGGCCGCAGAATTAGTTGGTGGTGCTCTTCTTTCTTCTTTCCTTCAAGTTGCATTTGATAGACTGGCTTCTCATCAAGTTTTGGACTACTTTCGTGGAAGAAAGCTTAACGAGAAGTTGCTGAAGAAGTTGAAGGTGAAGCTGCTCTCCATAAGTGTTGTGATTGATGATGCAGAAGAAAAGCAATTCAGTAATTCATATGTGAAAGCATGGCTTGATGAGGTCAAAGATGTTGTGTTTGATGCAGAGGATCTGTTGGATGAAATAGACTATGAGTTCTCCAAATGCAAGTTGGAAGCTGAATCATATACCGCTACTAACAAGGTACGCAATTTTGACACGGAAATTGTAACAAGGATGAAACAAGTCCTTGATGACCTGGAATATCTCTCAAGCCAAAAGAGTGATCTTGGTTTGGAAGAGGCTAGGGGTGTTGGTGTTGGATCAAGATTGAGTAGTAAAGTGTCACAAAAATTGCCATCAACATCTTTGGTAGTTGAAAGTGTTATTTATGGTAGAGATGATGAAAAGGAAGTTATCTTTAATTGGCTCACAACTAACACTAATAAGGGTAACCAGCTATCAATACTTTCTATAGTGGGCATGGGTGGGGTTGGTAAGACCACGCTTGCCCAACATGTATACAATGATCCAAGGATGGAGGAGGCTAACTTTGGCATCAAAGCTTGGGTTTGTGTTTCGAATGATTTTGATGTTTTGACAGTATCGAAAAAAATTCTTGAGGCAATCACTAAATCAAAAGATGATAGTGGAGACCTAGAAATGGTTCATGGAAGATTGAAAGAAAAGTTGTCAGGGAAGATATTTCTTTTGGTTTTAGATGATGTTTGGAATGAAAGACGGGAGAAATGGGAAGTTGTGCAAACTCCTCTCATTTATGGGGCACAAGGAAGTAAAATTCTTGTCACGACACGAAGTAAGAAAGTTTCTTCGATGATGCAGTCAAATAAAGTACATCACCTAAAGCAATTACAAGAAGATCATAGTTGGCAAGTTTTTGCCAAACACGCACTCCAAGATGATAATACTCAAGCAAATTTTGAATTGAAGGAGATTGGTATAAAAATAGTTAAGAAGTGTAAAGGATTGCCTCTAGCCTTGAAAACAATTGGAAGTCTTCTACACACAAAATCATCTATTTCAGAGTGGATAAATATATTGACAAGCAAGATATGGGACTTACCAAAGGAATATAGTGAAATTATTCCTGCTTTATTATTGAGTTATTATCACCTTCCTTCTCATCTCAAGAGATGTTTTGCTTATTGTGCCTTATTCCCCAAAGATTATGAGTTTGATAGGGAAGGTTTAGTTCTGTTGTGGATGGCTGAAAATTTTCTAGAATGCCCTCGAGAGAACAAAAGTCTAGAAGATGTTGGTGAAGAGTACTTTGATGATCTATTATCGAGGTCTTTCTTTCAACAATCACACCCATACAAAACGTATTTTGTCATGCATGACCTTCTTAATGATTTGGCAAAATATGTTTGTGGAGACATCTGTTTCAGGTTAGGAGTTGATAAGGCAAAAAGTATACCGAGATCGACCCGTCATGTTTCATTTGTAATGAAAAACTTCCATGGGCTTGAGAATTTATATGAAGCTAAAAGGTTACGTACATTCATGCCAACAATTGGAACAACGGATATTTTTTGTAGTGGTTGGCATTGCAAGACATTGATACATGAGTTGTTCTCCAGGTTTAAGTTCTTACACATATTATCTTTGTCTTCTTGTTCTGACCTTACAGAGGTGCCTGACTCTGTAGGTGATCTTAAACACCTTCGTTCCTTAGACCTTTCTGAAACTGATATAAAAAAACTACCCGATTCAATATGTTCCCTCTACAACTTGCAAATACTAAAGTTGAGTCGTTGTATATATTTGGAGGAGCTACCATTGAATTTGTATAAACTCATCAATTTGCGTCACCTTGAGTTCTCATGGACTAAAGTTAGAAAGGTGCCAATGCATTTGGGAAATTTGAAGAATCTTCATGTATTGAGTTCATTTTATGTTGGTAAAAGTGATGAGTCTAGTATTCAGCAGCTACGAGAACTCAATCTTCATGGAAGGCTATCAATTGGTCAGATAAAGAATATTCACAATCCTGTGGATGCATTAGCAGCAGATTTAAAAAATAAAACACGTCTTGCTGAGTTAAAGTTAAATTGGAATTGGAATTGGAACCAGAACCAGACCCCTAGTGATCCAAGGAAAGAAAGAGAAATACTTGAAAATCTTCAACCTTCCAAATACTTGAAATATTTTTCTATCCGAAACTATGGAGGTACACAATTTTCAAGTTGGTTATTTGATAATTCATTATTGAACGTTGCATCCTTAAGTTTGGGCAATTGTAAATACTGTCTATGTTTGCCTCCCCTTGGACTTTTGCCATTTCTCAAATGTCTAAAGATTACAGGGCTTGATGGGATAGTGAGTATTGATGATAATTTTTGTGGGAGTAGCACTTCATCATTTACATCTTTGAAAAGATTGAACTTCTCCAAGATGAAGGAATGGGAAGAATGGGAATGTAAGGATGGTGCTTTTCCATGTCTTGACCATCTTTCTATAGTCAAATGTCCCAAGTTGAAAGGGAACCTACCAAAGCAACTTCTTCATTTGAAGAATCTAGATATTCATGACTGTAGACAACTTGTGGCTTCTGCTCCAGTGGCTCGAGAAATTT 2716 0.37 MAAELVGGALLSSFLQVAFDRLASHQVLDYFRGRKLNEKLLKKLKVKLLSISVVIDDAEEKQFSNSYVKAWLDEVKDVVFDAEDLLDEIDYEFSKCKLEAESYTATNKVRNFDTEIVTRMKQVLDDLEYLSSQKSDLGLEEARGVGVGSRLSSKVSQKLPSTSLVVESVIYGRDDEKEVIFNWLTTNTNKGNQLSILSIVGMGGVGKTTLAQHVYNDPRMEEANFGIKAWVCVSNDFDVLTVSKKILEAITKSKDDSGDLEMVHGRLKEKLSGKIFLLVLDDVWNERREKWEVVQTPLIYGAQGSKILVTTRSKKVSSMMQSNKVHHLKQLQEDHSWQVFAKHALQDDNTQANFELKEIGIKIVKKCKGLPLALKTIGSLLHTKSSISEWINILTSKIWDLPKEYSEIIPALLLSYYHLPSHLKRCFAYCALFPKDYEFDREGLVLLWMAENFLECPRENKSLEDVGEEYFDDLLSRSFFQQSHPYKTYFVMHDLLNDLAKYVCGDICFRLGVDKAKSIPRSTRHVSFVMKNFHGLENLYEAKRLRTFMPTIGTTDIFCSGWHCKTLIHELFSRFKFLHILSLSSCSDLTEVPDSVGDLKHLRSLDLSETDIKKLPDSICSLYNLQILKLSRCIYLEELPLNLYKLINLRHLEFSWTKVRKVPMHLGNLKNLHVLSSFYVGKSDESSIQQLRELNLHGRLSIGQIKNIHNPVDALAADLKNKTRLAELKLNWNWNWNQNQTPSDPRKEREILENLQPSKYLKYFSIRNYGGTQFSSWLFDNSLLNVASLSLGNCKYCLCLPPLGLLPFLKCLKITGLDGIVSIDDNFCGSSTSSFTSLKRLNFSKMKEWEEWECKDGAFPCLDHLSIVKCPKLKGNLPKQLLHLKNLDIHDCRQLVASAPVAREI 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01629 905 PRINTS Disease resistance protein signature 879 895 - -
Cca04g01629 905 PRINTS Disease resistance protein signature 196 211 - -
Cca04g01629 905 PRINTS Disease resistance protein signature 367 381 - -
Cca04g01629 905 PRINTS Disease resistance protein signature 270 284 - -
Cca04g01629 905 PANTHER OS05G0414200 PROTEIN 13 880 - -
Cca04g01629 905 Gene3D - 19 131 - -
Cca04g01629 905 Pfam NB-ARC domain 174 416 IPR002182 GO:0043531
Cca04g01629 905 Gene3D - 330 414 IPR042197 -
Cca04g01629 905 SUPERFAMILY L domain-like 491 892 - -
Cca04g01629 905 Pfam Rx N-terminal domain 11 102 IPR041118 -
Cca04g01629 905 PANTHER DISEASE RESISTANCE PROTEIN RP 13 880 IPR044974 GO:0006952
Cca04g01629 905 Gene3D - 152 327 IPR027417 -
Cca04g01629 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 430 IPR027417 -
Cca04g01629 905 Gene3D - 415 502 IPR036388 -
Cca04g01629 905 Gene3D Ribonuclease Inhibitor 549 901 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01629 Cca-Chr4 25279675 25282459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01629 197 433 WRKY Transcription Factor Family AT5G45050 27.016 1.80e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01629 - - gmx:100781012 1267.29