Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01607 ATGGCAGTAGCATTAGTTGGTGGTGCTCTTCTTTCTGCTTTCCTCCAGGTTGCATTTGACAGACTTGCTTCTCGTCAAGTTTTGGACTTCTTTCTTGGAAGAAAGCTCGATGAGACACTGGTGAGCAACTTGAACACCATGCTGCGGTGCATCAATGCTTATGCTGAGGATGCAGAACAAAAGCAGGTCAGAGATTCACGCGTGAAAGCATGGCTTACTGATGTCAAAGATGTTGTGCTTGACGCAGAGGACCTCTTGGATGAAATAGACTATGAACTCTCAAAAGCTGAATCTGAATCTCAAACCTGTACTTGCAAGGTAACAGTACCTTTCTTTAATGCTGCTTTAAGTTCATTTAACAGGAAAATTGAGTCAAGGATGAGACAAATCCTTGAAAAATTGGAATATCTTGCTGGGTTAAAGGGTGATTTGGGTTTGAAAGAGTCTACTGATTCTGGTGTTGGATCAGTTAGTGAAGTGTTACAAAGGGTGCCATCAACGTCTTTGCTTGGTGGAAGTGTTTTATATGGTAGAAATGATGACAAAGAAGTGATTTTTAATTGGCTGATGTCTGACATTGAGAATGGTAACCATCCATCAGTATTTTCTATTGTGGGTATGGGTGGGATGGGTAAGACCACGCTTATGCAACATGTATACAATGATTCAAAGATAGAGGGTAAATTTGATATTAAAGCTTGGGTTTATGTTTCAGATGATTTTGATGTTTTAAAGGTATCAAGAGCAATTCTTGACACAATTACTAAATCAGTTGATGATAGTAGAGAGCTAGAAATGGTTCATGGAAGATTGAGAGACTTTTTGACAGGAAAGAGATTTCTTCTTGTTTTGGATGATGTTTGGAACAAAAAACAAAAACAATGGGAAGCTTTGCAAACTCCTCTTAGTTATGGAGCTCAAGGAAGTAAAATTGTTGTCACCACACGTGACATGAAAGTTGCTTCAACTGTCAGATCAAACAAGATACATCTCCTAAGACAATTACAAGATGATCATTGCTGGCAATTGTTTGCTAAACATGCATTCCATGATGAAAATCCTCAATCAAATTCACACTGCAAGGCAATTGGTATGAAGATAGTTGAAAAATGCAAAGGACTGCCACTAGCCTTGTCAACAATTGGAGGTTTGTTACACAAAAAATCATCTATTTTGCAATGGGAGAGTGTATTAACAAGTGAGATATGGGAATTTTCTGAAGAGGATAGTGAAATTATCCCTGCTTTATTATTAAGCTATCACCACCTTCCTGCTCAACTCAAGAGATGTTTTGCTTATTGTGTCTTATTTCCCAAAGGTTATGAGTTTGACAAGGAGGATTTAGTTCTGTTATGGATGGCTGAAAATTTTGTACAGTGCTCTCAACAGAATATGAGTATGTTAGAAGTTGGCAGACAATACTTTGATGATCTGCTATCAAGGTCCTTTTTTCAACAATCAGGTGGAGAGCAGATGTATTATGTCATGCATGATCTTCTCAATGATTTGGCAAAATATGTTGGTGGGGATTTTTGTTTCAGGTTGGACGTTAAAGAAACAACAATTATTCCTATAACCACCCGCCATTTTTCATTGGGACAGAATTGCATTCATAATTTTGCAGGGTTTAAGGGTTTATATCATGGTGACAAATTGCGGACATTTCTACCATTAAGTACGACTCCAAATGGTATTGTATGTTGGAGTTGTAGAACATCTAGCACGTTCATAAATGATTTGTTTTTGAAGTTTAAGTACTTGCGTGTCTTATCTTTGTCGGGTAATTCTAGTCTTACAGAGGTACCTGACTCTATAGGCAATCTTAAACATCTTCGTTCTCTCGACCTTTCTTGTACCCATATAAGAAAGTTGCCTGATTCAATATGTTCACTCTATAATTTACAAATACTGAAGCTGAGATATTGTGCACATTTTGGAGGGCTGCCCTTGAACTTTAATAAACTCAAATTGCAACTCCTTGATTTGTCGGGAACCGATGTAAATAAGACGGCAATGACTTTAGTATCTAGATCCCGATAA 2040 0.3765 MAVALVGGALLSAFLQVAFDRLASRQVLDFFLGRKLDETLVSNLNTMLRCINAYAEDAEQKQVRDSRVKAWLTDVKDVVLDAEDLLDEIDYELSKAESESQTCTCKVTVPFFNAALSSFNRKIESRMRQILEKLEYLAGLKGDLGLKESTDSGVGSVSEVLQRVPSTSLLGGSVLYGRNDDKEVIFNWLMSDIENGNHPSVFSIVGMGGMGKTTLMQHVYNDSKIEGKFDIKAWVYVSDDFDVLKVSRAILDTITKSVDDSRELEMVHGRLRDFLTGKRFLLVLDDVWNKKQKQWEALQTPLSYGAQGSKIVVTTRDMKVASTVRSNKIHLLRQLQDDHCWQLFAKHAFHDENPQSNSHCKAIGMKIVEKCKGLPLALSTIGGLLHKKSSILQWESVLTSEIWEFSEEDSEIIPALLLSYHHLPAQLKRCFAYCVLFPKGYEFDKEDLVLLWMAENFVQCSQQNMSMLEVGRQYFDDLLSRSFFQQSGGEQMYYVMHDLLNDLAKYVGGDFCFRLDVKETTIIPITTRHFSLGQNCIHNFAGFKGLYHGDKLRTFLPLSTTPNGIVCWSCRTSSTFINDLFLKFKYLRVLSLSGNSSLTEVPDSIGNLKHLRSLDLSCTHIRKLPDSICSLYNLQILKLRYCAHFGGLPLNFNKLKLQLLDLSGTDVNKTAMTLVSRSR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01607 679 ProSiteProfiles Leucine-rich repeat profile. 610 631 IPR001611 GO:0005515
Cca04g01607 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 434 IPR027417 -
Cca04g01607 679 Pfam Rx N-terminal domain 11 102 IPR041118 -
Cca04g01607 679 Gene3D Ribonuclease Inhibitor 564 676 IPR032675 -
Cca04g01607 679 PRINTS Disease resistance protein signature 201 216 - -
Cca04g01607 679 PRINTS Disease resistance protein signature 274 288 - -
Cca04g01607 679 PRINTS Disease resistance protein signature 371 385 - -
Cca04g01607 679 PRINTS Disease resistance protein signature 582 598 - -
Cca04g01607 679 PANTHER OS05G0414200 PROTEIN 14 662 - -
Cca04g01607 679 SUPERFAMILY L domain-like 495 666 - -
Cca04g01607 679 Pfam Leucine rich repeat 586 642 IPR001611 GO:0005515
Cca04g01607 679 PANTHER DISEASE RESISTANCE PROTEIN RP 14 662 IPR044974 GO:0006952
Cca04g01607 679 Gene3D - 23 135 - -
Cca04g01607 679 CDD RX-CC_like 27 100 IPR038005 -
Cca04g01607 679 Coils Coil 79 99 - -
Cca04g01607 679 Gene3D - 419 506 IPR036388 -
Cca04g01607 679 Pfam NB-ARC domain 180 420 IPR002182 GO:0043531
Cca04g01607 679 Gene3D - 334 418 IPR042197 -
Cca04g01607 679 Gene3D - 160 331 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01607 Cca-Chr4 24327037 24329076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01607 204 395 WRKY Transcription Factor Family AT5G45050 29.412 1.87e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01607 - - gmx:100777280 828.935