Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01598 ATGAATGGACTTGAAGAATCAACCAATGATGAAGTGGATGTTCATTTGAATGAAGTATCTAGCAGACAAACTGATCCACAAGAAGATGATAACAGTACTCCAAACATAAATAAAAACCCTGCACCAAAACTGGTGGCCAATGTAGTTCATAGAACTAGTGAACACAAGAATGCTAAAAGAGATATTGATCATCAAGAAAAAGCTCTCAAGAAGCCAGACAAAGTCCTGCCATGTCCTCGCTGCAATAGTTTGGACACAAAGTTTTGCTACTTCAACAATTACAATGTTAACCAACCAAGGCATTTCTGTAAGAATTGCCAAAGGTATTGGACAGCTGGGGGGACGATTCGAAACGTTCCAGTTGGGGCCGGTAAGCGTAAGAACAAGAACTCGGCTTTGCAGCATTGTCAGATGACTCCTGATGCTGAATCTGTGATGCAGACAGATTCAAAACCTGCTACTGCTACTGATATGTTTCTTTCATCTAACACACTTTCTGTGACTTCAAGACCTATGAAAGGAATGGAGAACATCTCAAGTCTTAGGGAGGAAGCTCCTCTTAGTGAATCCTTAGAAACTCTGTTAAGTCTCAAGGGCCAAACAAAAATTGAAGTGGCAACTTCTACTCTCAAAGATGATGATGAGGAGGAGGAGCCATCTATCTCTTCTATGAGATCTTCTGAAATTGAGCAGGTTGGTTTGACACAACATTCTAATGGTTTTATCCCTTTACATTCATTTCATTATTATCCTCTTCCTTCATGGCCTTACCATTGGAGTCAATGTTGGAATGTCATGGAGTTTAGGCCATGTAGCACAAGTTCTAGACCTGCTTACACAGATTCTCCAACCATGATGGCAGTTCCTAGCTTCTCCATGCCATCAGTAACACTACCAGCTCCAGCAGCGACGCCTTATTCGTATCCGAGTTTCATGTCAAACATGACTGGCCTAAAGGAAGAGACTTCCCTTGTTGGATCTGCATTTAGTGGTATCTCATTGTCAACAACATCTTCAGTTAGCAACAGTACTTGTTCTAGTAATAGGTCCCCAACCTTAGGTAAGCATTCTAGAGATATAAGTACACTGAGGGAAGATGCAATGAAACAGAATCTGTGGGTGCCTAAGACTATAAGAATCAATGATCCAGAAGAGGCTGCAAATAGTTCTATATGGTCAACTTTGGGAACAAAATCTGAACAGAACAAACTCATTATGAAAGGAAGTGTTTTTAAATCATTTGAACCTAAGTCAAGTGCCAGTAATCATATGTCAGATGATAATCAAATCCTAAGAGCAAACCCTGCTGCTTTTTCACGCTCCGAATCGTTTCAGGAACGTGTGTAA 1347 0.4061 MNGLEESTNDEVDVHLNEVSSRQTDPQEDDNSTPNINKNPAPKLVANVVHRTSEHKNAKRDIDHQEKALKKPDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKNSALQHCQMTPDAESVMQTDSKPATATDMFLSSNTLSVTSRPMKGMENISSLREEAPLSESLETLLSLKGQTKIEVATSTLKDDDEEEEPSISSMRSSEIEQVGLTQHSNGFIPLHSFHYYPLPSWPYHWSQCWNVMEFRPCSTSSRPAYTDSPTMMAVPSFSMPSVTLPAPAATPYSYPSFMSNMTGLKEETSLVGSAFSGISLSTTSSVSNSTCSSNRSPTLGKHSRDISTLREDAMKQNLWVPKTIRINDPEEAANSSIWSTLGTKSEQNKLIMKGSVFKSFEPKSSASNHMSDDNQILRANPAAFSRSESFQERV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01598 448 Pfam Dof domain, zinc finger 73 130 IPR003851 GO:0003677|GO:0006355
Cca04g01598 448 PANTHER CYCLIC DOF FACTOR 2 2 448 IPR045174 GO:0003700|GO:0006355
Cca04g01598 448 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 2 448 - -
Cca04g01598 448 MobiDBLite consensus disorder prediction 8 25 - -
Cca04g01598 448 MobiDBLite consensus disorder prediction 1 43 - -
Cca04g01598 448 MobiDBLite consensus disorder prediction 339 359 - -
Cca04g01598 448 MobiDBLite consensus disorder prediction 26 40 - -
Cca04g01598 448 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Cca04g01598 448 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Cca04g01598 448 MobiDBLite consensus disorder prediction 207 227 - -
Cca04g01598 448 MobiDBLite consensus disorder prediction 339 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01598 Cca-Chr4 24171062 24174162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01598 65 446 C2C2-Dof Transcription Factor Family AT5G39660 37.406 3.40e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca04g01598 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01598 - - ccaj:109811729 855.514