Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01575 ATGTACATATATGACTTTGCAGAGCTTTTAGAAATTGATACAAGACCATACACTTTTAGCTATTCTGAGTTAAAGAATGCTACAAAGGACTTTAATCTTGAAAATAAGCTTGGAGAAGGAGGTTTTGGACATGTTTATATGGGGATACTTAATGATGGAAGAGTTATTGCTGTAAAACAACTATCAGTAGGATCCCATCAAGGAAAGAGTCAGTTCATAACTAAGATTGCTACTATTTCAGTTGTGCAACATCGTAATCTAGTCAAATTATATGGGTGTTGCATTGATGGGAGTAAAAAACTTCTTGTCTATGAATATCTAGAAAACAAGAGTCTTGATCAAGCATTATTTGGTATGTGA 360 0.3333 MYIYDFAELLEIDTRPYTFSYSELKNATKDFNLENKLGEGGFGHVYMGILNDGRVIAVKQLSVGSHQGKSQFITKIATISVVQHRNLVKLYGCCIDGSKKLLVYEYLENKSLDQALFGM 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01575 119 ProSitePatterns Protein kinases ATP-binding region signature. 37 59 IPR017441 GO:0005524
Cca04g01575 119 Gene3D Phosphorylase Kinase; domain 1 4 106 - -
Cca04g01575 119 SUPERFAMILY Protein kinase-like (PK-like) 12 118 IPR011009 -
Cca04g01575 119 PANTHER BNAC03G71060D PROTEIN 5 118 - -
Cca04g01575 119 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 118 - -
Cca04g01575 119 Pfam Protein tyrosine and serine/threonine kinase 32 116 IPR001245 GO:0004672|GO:0006468
Cca04g01575 119 ProSiteProfiles Protein kinase domain profile. 31 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01575 Cca-Chr4 23331390 23332380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01575 5 118 Receptor kinase-like Gene Family AT1G56120 71.053 5.59e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01575 PK_Tyr_Ser-Thr 5.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01575 - - gmx:100798233 206.068