Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01573 ATGACAGATAAAGTTCCTGAGATTGAAGAAGCTGCCGAGCCTCCAGCTTCACGCCAATCATCTGCTGATGTGCTCCATAATTTGGAAACGGAGCAAATGGCTCCTACAAAGTATTCTATTATCAGTAGGAATGGGATTGGGACCACAGGGAAACGCATACCTTTACTTGTGAATCTTTTCAAAGTTGATGTTAATGCTCCAAATCCAGACACAATGTTTTTCCAGTATAGTGTTACTATTACTTTCGAAGATAAAAGAGCTGTTGAAAGCAAGGGAATTTGGAGAAAAGTGATTCATAGACTTTACCAAATGTACTCTTCTGAACTTGGTGGCAAAAGGTTTGCCTATGATGGAGGGAGAGCTTTGTACACAGTGGGTCCTCTGCCGCTAAATAAATATGAATTCAAGGTGTTGCTGGAGGAGTCTTTTACTAAATGTGCTGAGAGTCCCGGTGTTAACGGAAGCCTCTGTGAGAAAACAAAAAGGTCAAAACATTCTTTTCAATCAAAGACATTCATAGTGGAGATTAGTTTTGTTGCCAAAATACCCCTGCAGTCCATTGCCCTCAAAGAGGTCGAGTCAGATGCTTTGAGAGTGCTTGATATTGTAATGAGGCAGCGCGCAGCTAATTGTGGGTGTCTCCTGGTAAGGCAATCTTTTTTTCATGATGACTCAAGAAATTTCACCGATATTGGGGCTGGTGTAACAGCAGTCTCGGGTTTTCATTCAAGTTTTCGTCCTACACAGCGAGGATTGTCTTTCAATATGGATGTTTCAACAACTATGATCATAAAACCTGGACCTGTAGTTGATTTTCTGTTAGCAAACCAGCAAGTGAGGGAACCCCGTTATATTGACTGGGCAAAGGCCAAAAAAATGCTTAAAAATTTAAGGGTGCAAGCAACTCATAGTAACCAGAAATTTAAAATTTATGGCTTCAGTGAGAAACCATGCATTCAACAACTTTTTAGTATGAAGGTTAAAAACGATAATGGCAATAATGAGGGGCAGACAGTAGATATTACTGTATATGAGTATTTTGCCAAACATCGTGGCATAGAGCTGACCTCATCTGCTTATCTTCCATGTCTTGATGTAGGGAAGCCAAATCGGCCCATTTACCTTCCCTTGGAGCTATGTGCACTTGTTTCCCTCCAACGGTATACAAAGGTATTATCTCCAATGCAAAGAGCATCTTTAGTTGAAAAATCACGCCAAAAGCCTCAAGATAGAATCAAAATCCTGAAAAATGCTGTAGGAAATTATTGCTACGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTATTGAGAAACAATTGACACTGGTTGAAGGTCGTGTTCTTGAGACACCAAAGTTGAAGGTTGGTAAGAATGATGATTGCTTCCCCAATAGTGGAAGGTGGGACTTTAATAAGAAGACACTTCTACAACCATCGCATATCGATTTTTGGGCTGTTGTAAACTTTTCTGCACGTTGTGATACTAGTTACATTTCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGAATTAACATTGAAAGGCCATATACTTTGATAGAGGAGGAACCACAGTTGAGAAAATCTAATCCTGTTACAAGGGTTGAAAGAATGTTTGACCTGCTTGCATCAAAACTTACAAGAGAACCGAACCTGATTCTTTGTGTTCTGCCAGAAAGGAAAAATTGTGATATATATGGTATATATTTAGCAAATGTTTCAATAGTTTCTTTTACATCAAATCTTTTTTATTCGACTTATGATCATTCATCAACTTTAGGGCCTTGGAAAAAGAAGTGTCTGAGTGAAATTGGTGTTGTCACACAGTGCATTTCCCCTCCTCTCAAGATCACTGATCAATACCTTACTAATGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATAGAGCATTCTGGGCATCTTCCCCTGATTAAAGATACCCCAACAATGATTTTGGGGATGGATGTCTCTCACAGTTCACTTGGTCGATCAGATATTCCATCAATTGCAGCTGTTGTTGGATCTCGACATTGGCCACTGATTTCAAGGTATAGAGCAACTGTGAGAATGCAGGCATCTAAGTTGGAGATGATTGATGCTCTATTCAAGCCATTGGAAAATGGGAGTGATGATGGTATTATCAGAGAATTGCTTTTAGATTTCTATCAATCAAGTAATGGGCGCAAGCCAACTCAATTTATTGTCTTCAGGGACGGAGTTAGTGAATCACAATTTAAACAAGTTTTGGATATCGAGATTAACCAGATAATCAAGGCCTATCAACATCTTGGTGAGACTAATGTTCCCAAGTTCACCGTGATTGTGGCACAGAAAAATCATCATGTTAAGCTGTTTCTAGCTAATGGACCGGAAAATGTTTCTCCTGGGACGGTTGTGGACACTACGATCACCCATCCAAGAAATTATGATTTCTACATGTGTGCTCATGCAGGGATGATTGGTACATCTAAGCCTGTTCATTATCATGTGCTACTTGATGAGATTGGTTTCTCGGCTGATGGCTTACAAGATTTGATCTATTCGCTGTCCTATGTGTATGAATTCTACCTTTTGTTTATACATTTGGCACCCGTATCGTATGCTCACCATGCTGCAGCTCAGATGGGACAATTTTTTAATTTTGATGATTTATCAGAAACCTCTGATTCAGAGGGAAACATACCCATTCCAGAGCTTCCAAGGTTGCATAAGAATGTCAGGAGTTCCATGTTCTTCTGTTGA 2766 0.397 MTDKVPEIEEAAEPPASRQSSADVLHNLETEQMAPTKYSIISRNGIGTTGKRIPLLVNLFKVDVNAPNPDTMFFQYSVTITFEDKRAVESKGIWRKVIHRLYQMYSSELGGKRFAYDGGRALYTVGPLPLNKYEFKVLLEESFTKCAESPGVNGSLCEKTKRSKHSFQSKTFIVEISFVAKIPLQSIALKEVESDALRVLDIVMRQRAANCGCLLVRQSFFHDDSRNFTDIGAGVTAVSGFHSSFRPTQRGLSFNMDVSTTMIIKPGPVVDFLLANQQVREPRYIDWAKAKKMLKNLRVQATHSNQKFKIYGFSEKPCIQQLFSMKVKNDNGNNEGQTVDITVYEYFAKHRGIELTSSAYLPCLDVGKPNRPIYLPLELCALVSLQRYTKVLSPMQRASLVEKSRQKPQDRIKILKNAVGNYCYDDDPVLAACGISIEKQLTLVEGRVLETPKLKVGKNDDCFPNSGRWDFNKKTLLQPSHIDFWAVVNFSARCDTSYISRELIRCGMSKGINIERPYTLIEEEPQLRKSNPVTRVERMFDLLASKLTREPNLILCVLPERKNCDIYGIYLANVSIVSFTSNLFYSTYDHSSTLGPWKKKCLSEIGVVTQCISPPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHSSLGRSDIPSIAAVVGSRHWPLISRYRATVRMQASKLEMIDALFKPLENGSDDGIIRELLLDFYQSSNGRKPTQFIVFRDGVSESQFKQVLDIEINQIIKAYQHLGETNVPKFTVIVAQKNHHVKLFLANGPENVSPGTVVDTTITHPRNYDFYMCAHAGMIGTSKPVHYHVLLDEIGFSADGLQDLIYSLSYVYEFYLLFIHLAPVSYAHHAAAQMGQFFNFDDLSETSDSEGNIPIPELPRLHKNVRSSMFFC 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01573 921 Pfam PAZ domain 270 400 IPR003100 GO:0005515
Cca04g01573 921 Pfam Argonaute linker 1 domain 216 265 IPR014811 -
Cca04g01573 921 PANTHER PROTEIN ARGONAUTE 6 591 920 - -
Cca04g01573 921 Gene3D paz domain 260 388 - -
Cca04g01573 921 CDD Piwi_ago-like 428 882 IPR045246 -
Cca04g01573 921 SUPERFAMILY Ribonuclease H-like 538 888 IPR012337 -
Cca04g01573 921 Pfam N-terminal domain of argonaute 51 204 IPR032474 -
Cca04g01573 921 ProSiteProfiles PAZ domain profile. 291 384 IPR003100 GO:0005515
Cca04g01573 921 SMART PAZ_2_a_3 267 401 IPR003100 GO:0005515
Cca04g01573 921 Pfam Argonaute linker 2 domain 413 455 IPR032472 -
Cca04g01573 921 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 569 - -
Cca04g01573 921 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 591 920 - -
Cca04g01573 921 Pfam Piwi domain 589 887 IPR003165 GO:0003676
Cca04g01573 921 Gene3D - 448 642 - -
Cca04g01573 921 ProSiteProfiles Piwi domain profile. 553 888 IPR003165 GO:0003676
Cca04g01573 921 SUPERFAMILY PAZ domain 261 424 IPR036085 GO:0005515
Cca04g01573 921 MobiDBLite consensus disorder prediction 1 21 - -
Cca04g01573 921 PANTHER PROTEIN ARGONAUTE 6 32 569 - -
Cca04g01573 921 Gene3D - 648 921 IPR036397 GO:0003676
Cca04g01573 921 CDD PAZ_argonaute_like 266 383 - -
Cca04g01573 921 SMART Piwi_a_2 574 888 IPR003165 GO:0003676
Cca04g01573 921 SMART DUF1785_2 214 266 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01573 Cca-Chr4 23193968 23209466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01573 43 921 Eukaryotic Initiation Factors Gene Family AT5G43810 34.194 1.63e-149 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01573 K11593 - gmx:100778875 1504.58