Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01572 ATGACTTGTTTCCCATTCTCATTTGGTAAGAAAGTGCCTTTTGTCGCAAAACATGATCCAGATATTGATGAAGAACTCCAAGGCATTCAAAACGTAAGAATCTATACCTACAAAGAACTAAAAGTTGCTACCAACAATTTCAGCCCGGCCAATAAAATTGGGCAGGGTGGCTTCGGTTCAGTTTATAAGGGATTGCTAAAAGATGGGAAAGTAGCTGCTATAAAAGTTCTTTCAGCAGAATCAAGTCAAGGGGTGAAAGAATTTATGACAGAGATTAATGTGATCTCTGAAATAGAGCATGAAAATTTGGTTAAGCTATATGGTTGTTGTGTGGAAGGGAGTCAACGGATATTAGTCTATAATTATTTGGAGAACAATAGCCTTTCACAAACCCTTCTAGGTTCAGGTCACAGTAATATTGTTTTTGACTGGAAAACACGATCTAAGATTTGCATTGGGGTTGCACGTGGGCTTGCCTATCTTCATGAGGAAATAAGACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAAACCTGTCTCCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCATGTCAGCACACGTGTGGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAGCTTACACGTAAAGCAGATATTTACAGCTTTGGTGTCCTCCTTGTGGAGATAGTTAGTGGAAGATGTCACACAAATACACGATTACCAATAGGAGAGCAATTTCTTCTAGAAACGACCTGGGAACTTTATCAACAAAGGGAACTTGTAGGGCTGGTAGACGTGTCGCTAAACGGGCATTTCGATGCAGAGGAGGCTTGTAAGTTTCTGAAAATTGGACTTCTTTGCACTCAGGACACCTCGAAGCTCCGGCCACCGATGTCTTCTGTGGTCAAGATGCTCACAGGAGAAATGGATGTTGATGAAAGTAAGATAACAAAGCCAGGAATGATTTCAGATTTTATGGACCTTAAAATCAGAGAAGGAAAGGGTGGTGGTGACATTGATTCCAAGGCCTCATCTTCTTCATACAATGCATCCTCTGCCTCAGACAGCCAGGGCAATACCATGTCATATGCTGCAAATACAACCTTCAGTGTGAAATATGATCAAAGCTTGTAA 1173 0.4075 MTCFPFSFGKKVPFVAKHDPDIDEELQGIQNVRIYTYKELKVATNNFSPANKIGQGGFGSVYKGLLKDGKVAAIKVLSAESSQGVKEFMTEINVISEIEHENLVKLYGCCVEGSQRILVYNYLENNSLSQTLLGSGHSNIVFDWKTRSKICIGVARGLAYLHEEIRPHIVHRDIKASNILLDKNLSPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRCHTNTRLPIGEQFLLETTWELYQQRELVGLVDVSLNGHFDAEEACKFLKIGLLCTQDTSKLRPPMSSVVKMLTGEMDVDESKITKPGMISDFMDLKIREGKGGGDIDSKASSSSYNASSASDSQGNTMSYAANTTFSVKYDQSL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01572 390 MobiDBLite consensus disorder prediction 353 374 - -
Cca04g01572 390 CDD STKc_IRAK 53 320 - -
Cca04g01572 390 Pfam Protein kinase domain 50 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01572 390 PANTHER - 2 373 - -
Cca04g01572 390 Gene3D Phosphorylase Kinase; domain 1 17 122 - -
Cca04g01572 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Cca04g01572 390 MobiDBLite consensus disorder prediction 349 374 - -
Cca04g01572 390 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 373 - -
Cca04g01572 390 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01572 390 SUPERFAMILY Protein kinase-like (PK-like) 27 318 IPR011009 -
Cca04g01572 390 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01572 390 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Cca04g01572 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01572 Cca-Chr4 23182282 23188094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01572 14 331 Receptor kinase-like Gene Family AT1G53430 55.172 7.80e-115 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01572 Pkinase 8.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01572 - - gmx:100797706 681.019