Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01570 aTGACACAAAAATATCAACTCAAAAAGGAGATTACGGAGTTGGAGTTTTTCAGTGAGTATGGAGATGCTAATAGATACAAGCTTCTCGAAGTTATAGGGAAGGGTAGCTATGGAGTTGTATGTGCAGCAATTGACACACACACCGGGGAAAAGGTTGCTATAAAGAAGATTCAAGACGTCTTTGATAATACCTCTGATGCCATTAGAATTCTCCGTGAAGTCAAGTTGTTAAGGCTATTAAGACACCCTGATTTGGTTGATATTAAAAGGATAATGTTGCCACCTTCAAAGAGGGAGTTTAAAGATATTTATGTAGTTCTTGAGCTCATGGAGTCTGATCTCCATCATGTCATCAAAGCTAATGATGACTTGACTCATGAACACCATCAATTTTTTCTTTATCAAATGCTACGTGCATTAAAGTATATGCATGCAGCTAATGTGTATCACAGAGATCTTAAGCCAAAGAATATATTGGCAAATGCAAACTGCAAACTCAAAGTTTGTGATTTTGGTTTGGCAAGAGTTGCATTCAATGATGCCCCAACAACATTATTTTGGACAGATTATGTTGCTACTAGATGGTACAGAGCCCCAGAGTTGTGTGGAACTTTCTTTGATAAGTATACACCAGCAATTGATATATGGAGTACTGGATGTATTTTTGCTGAGCTGCTAATAAGAAAGCCATTGTTTCCTGGTAAAAGTGTTTTCCATCAATTAGATTTGATTACAGATCTTCTTGGAACACCATCACCTGAAATTATTACAGGAGTTCGAAATAACAAAGCAAGAAAGTACTTGATGAGAATGGAAAGGAAGCTACCTATGTCATTTGAACAAAAGTTTCCGCATGTTGATCCAATGGCACTTTCTCTTTTACAAAAGATGCTAGCATTTGATCCAATGGATCGACCAACTGCTAAAGAGGCATTGGCTGATCCTTACTTCAAAGGCTTGGCCAAAGTTGAGAGAGAACCTTCATGTAAACCAATTTCAAAATTTGAATTTGAGTTTGAGCGGAGACGAATGATGAAAGAGGATGTTAGAGAACTACTATATCGAGAAATATTGGAATATCATCCACAATTGCTTAATGATTACATAAATGGATCTAAAGGCACAAACTTCATATATCCTAGTGCAATGGATCAATTTAGAAGACAATTTGTTTATCTTGAGGAAAATCAAGGTAAAAGTGGACCAGTGCTTCCTCTAGAAAGGAAACATATCTCTCTTCCAAGGTCCACTATTTATTCCACTACAATTCCTCCTAGTACCCAATCAACCCTTGTCTTGAATGAGAAAAAGAAAATTGCACTAGAGGCATCTATAAGTTTAAGAGATGCAGGGCCAATTACTAGAAATCAATTAAAAGGTTTACAACCTCAACCACAGGTTCCAACAGCTAAACCGGGGAGAGTTATAGGGCCAATTCTACATTATGAAGACCAAAGCAACATAGAAAACACTTATGACCCAAGGATTGTTTATCAAAATACTCGTCAAGCAGTCTCATCGCAATGTTTCTTTAATGCACATCTCCCAAACCCAAAGACAACATCATATATACATTAG 1578 0.3695 MTQKYQLKKEITELEFFSEYGDANRYKLLEVIGKGSYGVVCAAIDTHTGEKVAIKKIQDVFDNTSDAIRILREVKLLRLLRHPDLVDIKRIMLPPSKREFKDIYVVLELMESDLHHVIKANDDLTHEHHQFFLYQMLRALKYMHAANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPTTLFWTDYVATRWYRAPELCGTFFDKYTPAIDIWSTGCIFAELLIRKPLFPGKSVFHQLDLITDLLGTPSPEIITGVRNNKARKYLMRMERKLPMSFEQKFPHVDPMALSLLQKMLAFDPMDRPTAKEALADPYFKGLAKVEREPSCKPISKFEFEFERRRMMKEDVRELLYREILEYHPQLLNDYINGSKGTNFIYPSAMDQFRRQFVYLEENQGKSGPVLPLERKHISLPRSTIYSTTIPPSTQSTLVLNEKKKIALEASISLRDAGPITRNQLKGLQPQPQVPTAKPGRVIGPILHYEDQSNIENTYDPRIVYQNTRQAVSSQCFFNAHLPNPKTTSYIH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01570 525 ProSiteProfiles Protein kinase domain profile. 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01570 525 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524
Cca04g01570 525 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 11 454 - -
Cca04g01570 525 CDD STKc_TDY_MAPK 25 362 - -
Cca04g01570 525 Pfam Protein kinase domain 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01570 525 SMART serkin_6 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01570 525 Gene3D Phosphorylase Kinase; domain 1 41 363 - -
Cca04g01570 525 ProSitePatterns MAP kinase signature. 61 164 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cca04g01570 525 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 454 - -
Cca04g01570 525 SUPERFAMILY Protein kinase-like (PK-like) 22 321 IPR011009 -
Cca04g01570 525 Gene3D Transferase(Phosphotransferase) domain 1 112 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01570 Cca-Chr4 23074440 23084209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01570 3 511 MAP Kinase Gene Family AT1G53510 69.844 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Cca04g01570 Pkinase 4.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01570 - K04371 gmx:100800878 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01570 04 23074440 23084209 Cca04g01570 04 23074440 23084209 ECH