Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01568 ATGTCCAAGAAAGAGAAGAAAGAGAGAGCAGACTTCACAATAAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGGTGGGGTGTTAAAGGAATTAGTGGGGGCCAGAAGAGGAGAGTGAGCATATGCATTGAGATTCTAACACGACCAGGACTTCTGTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCCTATTATGTTATGAGTGGCATTGCTAGCCTTGACAAAAAAGATGACATGCACAGGACTGTTATTGCCTCAATCCACCAACCTAGTACTGAAGTTTTTCAACTTTTCCACAACCTTTGTCTTTTGTCTTCAGGTAGAACTGTTTACTTTGGACCTGCTTCTGCTGCAACTGAGTTTTTCGCTTCAAATGGTTTTCCTTGTCCTACTCTCATGAATCCTTCTGATCATTTACTGAAAACCATAAACAAGGATTTTGATCAGctcggagttcgtcgttcactccgttccaagGTGTTGGGTCCCTTCGGGTTGTAA 522 0.3927 MSKKEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPGLLFLDEPTSGLDSAASYYVMSGIASLDKKDDMHRTVIASIHQPSTEVFQLFHNLCLLSSGRTVYFGPASAATEFFASNGFPCPTLMNPSDHLLKTINKDFDQLGVRRSLRSKVLGPFGL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01568 173 Pfam ABC-2 type transporter 95 149 IPR043926 GO:0140359
Cca04g01568 173 Pfam ABC transporter 5 63 IPR003439 GO:0005524
Cca04g01568 173 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 1 156 - -
Cca04g01568 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 137 IPR027417 -
Cca04g01568 173 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 1 156 - -
Cca04g01568 173 Gene3D - 1 155 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01568 Cca-Chr4 22994342 22996092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01568 19 99 Calmodulin-binding Proteins AT2G36910 35.802 2.22e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01568 K05681 - gmx:100813462 290.812