Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01560 ATGCCTGGGAATAAGTATAACGGTAACTCGAACGAGCACATTCCAGGCCGTGTGGAACGGCTTGTGAGGGAAAGGGAACTGAGAAAGAATGGGAGGGTGAGTCCCTTGACGGAGGTGAATGAGAATAACAACGGTCGCAGGGTTGAAGGGTTCGAGTACGAGCCTGAACATGTGAAAAGAGAAGAGGGTGCTGTTGATGTTGTTGAAAGGGGTGGTgcggcggcggcggcggcggcgAAGGAGGAAAGGCAAGAGGCCAAGGCGTTCAGACAGAGGCTGCTGGTGGTGGCTAACAGGTTGCCGGTGTCGGCAGTGAGGAAAGGCGAGGATTCGTGGTCGTTGGAGATAAGTGCCGGTGGCCTCGTCAGCGCGCTATTGGGTGTCAAGGAGTTTGAGGCAAGGTGGATAGGTTGGGCCGGTGTGAACGTGCCAGATGAGATTGGACAGAAGGCACTTACTAAAGCCTTGGCTGAAAAGTGGTGTATCCCTGTATTTCTTGATGAAGAGATCGTTCATCAATATTATAATGGCTATTGCAACAACATATTGTGGCCTCTTTTCCATTATCTTGGACTTCCACAAGAAGATCGCCTTGCCACCACACGCAGTTTTCAGTCTCAGTTTGAGGCATATGAGAAAGCAAACGAAATGTTTGCTGATGTTGTGAACAAGCACTATGAAGAGGGTGACATTGTTTGGTGCCATGATTACCATCTTATGTTCCTTCCCAAATGCTTAAAGAAACACAACAAAAAAATGAAAGTTGGATGGTTTCTCCACACCCCTTTTCCATCTTCAGAAATTCACAGGACACTGCCGTCTCGTTCAGAGCTCCTGCATTCGGTTCTTGCTGCTGATTTAGTTGGTTTTCACACCTACGATTATGCAAGACATTTTGTTAGTGCTTGTACTCGCATCCTTGGACTTGAAGGTACCCCTTATGGGGTTGAGTATCAAGGGAAGCTAACTCGAGTTGCTGCATTTCCAATTGGAATAGACTCAGACCGATTTATACGTGCTCTTGACCTTCCCCCAGTTCAAGTTCACATGAAAGATTTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGCGTTGATCGCCTTGATATGATTAAAGGAATCCCTCAGAAAATTCTTGCATTTGAAAAATTTTTGGAAGAAAATCCTTCTTGGCGTGATAAAGTTGTTTTGCTTCAAATCGCTGTCCCGACAAGAACAGATGTTCCCGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATAGTTGGTCGCATCAATGGCAGATTTGGATCAATGGCTACTGTTCCTATACATCATTTGGATCGCTCACTTGACTTTAATGCTCTATGTGCTTTGTATGCTGTTACTGATGTAGCACTAGTCACATCTCTGAGGGATGGAATGAATCTTGTCAGCTATGAATTCGTTGCCTGCCAGGAGAAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCTGCACAATCTCTTGGTGCCGGGGCAATTCTTGTCAACCCCTGGAACATTACAGAAGTTGCTGATGCAATTGCCAGGGCTCTGAATATGGAATCTGCGGAAAGGGAAAAGAGACATAAGCATAACTTTCTTCATGTAAAATCCCACACTGCTCAAGAATGGGCAGGAACTTTCGTAAGTGAATTAAATGATACTGTTATTGAGGCACAACTAAGGACAAGACAAGTTCCACCTCGGCTTCCAACCAAGACTGCAATTGAGCGTTATCAGAAGTCAACTAATAGATTGCTTATTTTGGGATTCAGTGGAACTTTAACTGAACCAGTCGAGAAAACAGGTGATCAGATTAAAGAAATGGAACTTAAGGTGCATCCAAAATTGAGACAACCCTTGACAGCACTTTGCCGTGATCCAAATACCACAGTTGTTGTGCTCAGTGGAAGTGGCAGAAAAGTCCTAGATGATAACTTCAAAGAATATGACATGTGGTTGGCAGCTGAGAATGGAATGTTTTTACATCCTTCAAAGGGTGAGTGGATGACAACAATGCCAGAGCATCTGAATATGGAATGGGTCGATAGTGTGAAGCATGTTTTTGAGTACTTCAAGGAAAGAACACCTCGCTCACATTTTGATTTTGAAGAAAGGGAAACTTCACTTGTATGGAATTACAAATATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGACCTGTTGGCGTTACAAAGGGAGCAGCCATTGACCGCATCTTGGGTGAGATAGTGCACAGTAAATCCATGACATCACCCATTGATTATGTTCTTTGCATAGGACATTTTCTGGGGAAGGATGAAGATATTTATTCATTTTTTGAGCCGGATCTCCCCTCTATTGGTGTGGGTCTTCCACAAAGCAAGGTAACAACAGAAGGAGTTAAGTGTCCTGTTGAGAGGAAACCATCATTAAAGGTTCCAGCTACTAAGAGTGGACCAAAATCATCTCAAAATAAGGCACAACGGCCAGTGTCAAATTCTGAGAAGAAAACAAATAACCATATATGCAGTTCCCCACGAAAGCCAGCACCCGAAAAGGTATCATGGAATGTCCTTGACCTTAAGAAAGAGAATTACTTCTCTTGTTCTGTTGGAAGAACTAGAACGAATGCTCGGTATACGCTTGATTCACCGGACGATGTCGTTTCATTTCTGAAGGAGCTAGCCGGGGCTTCTTTCAAACTTTACCACTGA 2793 0.4339 MPGNKYNGNSNEHIPGRVERLVRERELRKNGRVSPLTEVNENNNGRRVEGFEYEPEHVKREEGAVDVVERGGAAAAAAAKEERQEAKAFRQRLLVVANRLPVSAVRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKWCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFEAYEKANEMFADVVNKHYEEGDIVWCHDYHLMFLPKCLKKHNKKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPYGVEYQGKLTRVAAFPIGIDSDRFIRALDLPPVQVHMKDLQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPSWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSMATVPIHHLDRSLDFNALCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVADAIARALNMESAEREKRHKHNFLHVKSHTAQEWAGTFVSELNDTVIEAQLRTRQVPPRLPTKTAIERYQKSTNRLLILGFSGTLTEPVEKTGDQIKEMELKVHPKLRQPLTALCRDPNTTVVVLSGSGRKVLDDNFKEYDMWLAAENGMFLHPSKGEWMTTMPEHLNMEWVDSVKHVFEYFKERTPRSHFDFEERETSLVWNYKYADVEFGKLQARDMLQHLWTGPISNASVEVVQGSRSVEVRPVGVTKGAAIDRILGEIVHSKSMTSPIDYVLCIGHFLGKDEDIYSFFEPDLPSIGVGLPQSKVTTEGVKCPVERKPSLKVPATKSGPKSSQNKAQRPVSNSEKKTNNHICSSPRKPAPEKVSWNVLDLKKENYFSCSVGRTRTNARYTLDSPDDVVSFLKELAGASFKLYH 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01560 930 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 922 IPR001830 GO:0003824|GO:0005992
Cca04g01560 930 CDD HAD_TPP 590 823 - -
Cca04g01560 930 Gene3D Glycogen Phosphorylase B; 83 338 - -
Cca04g01560 930 CDD GT20_TPS 92 557 IPR001830 GO:0003824|GO:0005992
Cca04g01560 930 Gene3D - 593 817 IPR023214 -
Cca04g01560 930 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 922 - -
Cca04g01560 930 MobiDBLite consensus disorder prediction 825 877 - -
Cca04g01560 930 SUPERFAMILY HAD-like 589 922 IPR036412 -
Cca04g01560 930 Pfam Trehalose-phosphatase 611 836 IPR003337 GO:0003824|GO:0005992
Cca04g01560 930 Gene3D - 679 761 - -
Cca04g01560 930 Gene3D Glycogen Phosphorylase B; 339 542 - -
Cca04g01560 930 Pfam Glycosyltransferase family 20 92 557 IPR001830 GO:0003824|GO:0005992
Cca04g01560 930 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 91 559 - -
Cca04g01560 930 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 92 557 IPR012766 GO:0003825|GO:0005992
Cca04g01560 930 MobiDBLite consensus disorder prediction 842 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01560 Cca-Chr4 22707874 22729956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01560 1 925 Trehalose Biosynthesis Gene Families AT1G78580 75.633 0.0 1438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01560 K16055 - gmx:100797320 1654.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01226 10 16120583 16139510 Cca04g01560 04 22707874 22729956 ECH
Cca04g01560 04 22707874 22729956 Cca04g01560 04 22707874 22729956 ECH