Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01554 ATGCTCTCGAATCTCAATTCGACCTTATCTCGAGTACCCCCCTCTAGGACTAGTTATAAGTCTTCCATGTATGGTAGTCTTGAGGCAATGCCTTTAGTCAAACCGTTTTCGAGTCTCATCACTTCGAGTGGTCTCAACACATGGGCAACTATTACTCAACATGGTAAACATGGGAATCGCAAAAAGGTAATCTTACCGGTTACAATTATAGCTTCGCTGGTTCTTGTGATGTTATCAGCATTCTGTTTTTACAACACCAAGAAAAAATATAAAGGGGATGTAAGGACAAGAATGTCTACCGAGGAGGCAGATGAAGACAAACAAGATGATTTAGAGCTTCCTTTCTTTGATTTTGCTACAATAGTTAATGCTACCAATAACTTTTCAATTGAGAATAAGCTTGGTGAAGGTGGTTTTGGGCCAGTATATAAGGGTATATTTGTAGATGGACAAGAAATTGCAATCAAAAGGCTTTCACAAAGTTCAGGACAAGGATTAAAAGAATTTAGGAATGAAGTTATATTGTGTGCCAAACTTCAACATCGAAATCTCGTTAAGGTTTTGGGTTATTGCATTAAAGGAAAGGAGAAAATGTTACTTTATGAATACATGCCTAACAAAAGTCTTGATTTATTTCTTTTTGAGTCAACTCAAAGTAAATGTTTAGATTGGCCGGTGCGTTTTAACATTTTGAATGCAATTGCTCGAGGGCTTCTTTATCTTCATCAGGATTCTAGATTGAGGATCATACACAGAGATCTAAAAGCAAGTAATATTTTATTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGTCTTGCTAGAATGTGTGGAAGTGATCAAGTTGAAGGAAGTACAAGTATCATAGTTGGGACACATGGCTACATGGCACCTGAATATGCCATTGATGGATTATTTTCTACAAAATCGGATGTGTTCAGCTTTGGAGTACTATTGCTAGAAATTATTAGTGGAAAGAAAAACAAAGCATTTACCTACCTTGATAACAACCATAATCTTATTGATCATGCATGGACATTATGGGAAAATGGCACTCCAGAGAAATTAATTGATGCTTGTTTGGAAAACTCTTGCAATATATTTGAAGTTGTACGATGCATTCAAATTATTCTTCTATGTCTACAACATCACCCAAATGATAGGCCGAATATGACATCAGTTGTTGTTATGTTGACTAGTGAAAATGCTTTGCCTTCACCTAAGGAACCTGGTTTCTTGATTAGAAGGGTCTCAGATGAAGAAGGAGAATCATCTTCTAATAAACACACATCTTATTCAATCAATGAAGTAACTGTATCAATTTTAAATGCTAGATAA 1341 0.355 MLSNLNSTLSRVPPSRTSYKSSMYGSLEAMPLVKPFSSLITSSGLNTWATITQHGKHGNRKKVILPVTIIASLVLVMLSAFCFYNTKKKYKGDVRTRMSTEEADEDKQDDLELPFFDFATIVNATNNFSIENKLGEGGFGPVYKGIFVDGQEIAIKRLSQSSGQGLKEFRNEVILCAKLQHRNLVKVLGYCIKGKEKMLLYEYMPNKSLDLFLFESTQSKCLDWPVRFNILNAIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARMCGSDQVEGSTSIIVGTHGYMAPEYAIDGLFSTKSDVFSFGVLLLEIISGKKNKAFTYLDNNHNLIDHAWTLWENGTPEKLIDACLENSCNIFEVVRCIQIILLCLQHHPNDRPNMTSVVVMLTSENALPSPKEPGFLIRRVSDEEGESSSNKHTSYSINEVTVSILNAR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01554 446 SMART serkin_6 128 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01554 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Cca04g01554 446 Pfam Protein tyrosine and serine/threonine kinase 129 398 IPR001245 GO:0004672|GO:0006468
Cca04g01554 446 SUPERFAMILY Protein kinase-like (PK-like) 112 423 IPR011009 -
Cca04g01554 446 CDD STKc_IRAK 134 400 - -
Cca04g01554 446 ProSiteProfiles Protein kinase domain profile. 128 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01554 446 Pfam Domain of unknown function (DUF3403) 401 446 IPR021820 GO:0004674
Cca04g01554 446 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 56 439 - -
Cca04g01554 446 Gene3D Transferase(Phosphotransferase) domain 1 204 408 - -
Cca04g01554 446 Gene3D Phosphorylase Kinase; domain 1 87 203 - -
Cca04g01554 446 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 56 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01554 Cca-Chr4 22559999 22565870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01554 55 416 Receptor kinase-like Gene Family AT4G23230 53.825 1.14e-134 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01554 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01554 - - gmx:100776310 664.07