Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01552 ATGAAGATTCAGTGCAACGTGTGTGAAGCCGCCGAGGCCAAGGTTCTGTGCTGCGCCGACGAGGCCGCACTGTGCTGGGAATGCGATGAGAAGGTTCACGCCGCTAACAAGCTCGCCACCAAGCACCAGAGAGTGCCTCTCTCTCTATCTGCTTCCCACATGCCCAAGTGTGACATATGTCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGGGCTTTGCTATGTAGAAATTGTGATGTATCTATACACACAGCAAATGCCTGTGTTTCTGGTCATCAGAGGTTTTTGCTTACTGGTGTAAGAGTTGGCCTTGAAGCTACTGAGCGTGGTGCTTCTTCATCTTCTGTGAAGTCACAATCTGGGGAGAAAATGTCTGGTGCTAAATCTCCTTCCATCTCCAGAAATGTTTCCTCGCTTCCCCCGCATTCAAATTTGAATGAAGTGTTACCACTCCAAATGGGAGGAATCGAGGAGTTTCCACCAAATAGGGTGTCTTATGGTGGGGGTTATACTGCTGGAAACATCTCACAATGGCCCATTGAAGAATTTCTTGGCTTAAATGAATTCAGTCAGTATTATAATTACATGGATGGATCATCTAAGGCTGACAGTGGTAAACATGGTGATTCTGATTCTTCAGTTTTGAGGTCTAGTGAAGAAGAAATGGACGACGACGGCTTCTTGGGTCGTGTTCCAGATTCATCCTGGACAGTTCCTCAAATCCCTTCCCCTCCTACAGCTTCAGGGTTACATTGGCCAAAAGTCCCTCATTATACATCTGACAATGCTATGTTTGTTCCTGACATATGCTTTAATCGCCCGCAACAGCCCCACCATGCTCAGCATAATTCTGTTATTTCGAAACGGCGAAGGCAACAATAA 888 0.4606 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLATKHQRVPLSLSASHMPKCDICQEMVGYFFCLEDRALLCRNCDVSIHTANACVSGHQRFLLTGVRVGLEATERGASSSSVKSQSGEKMSGAKSPSISRNVSSLPPHSNLNEVLPLQMGGIEEFPPNRVSYGGGYTAGNISQWPIEEFLGLNEFSQYYNYMDGSSKADSGKHGDSDSSVLRSSEEEMDDDGFLGRVPDSSWTVPQIPSPPTASGLHWPKVPHYTSDNAMFVPDICFNRPQQPHHAQHNSVISKRRRQQ 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01552 295 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 294 - -
Cca04g01552 295 CDD Bbox1_BBX-like 5 47 - -
Cca04g01552 295 MobiDBLite consensus disorder prediction 274 295 - -
Cca04g01552 295 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Cca04g01552 295 Gene3D Classic Zinc Finger 1 92 - -
Cca04g01552 295 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cca04g01552 295 MobiDBLite consensus disorder prediction 201 255 - -
Cca04g01552 295 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cca04g01552 295 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cca04g01552 295 MobiDBLite consensus disorder prediction 204 230 - -
Cca04g01552 295 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 294 - -
Cca04g01552 295 MobiDBLite consensus disorder prediction 113 146 - -
Cca04g01552 295 CDD Bbox1_BBX-like 56 99 - -
Cca04g01552 295 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01552 Cca-Chr4 22517376 22522118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01552 1 294 C2C2-CO-like Transcription Factor Family AT1G78600 47.147 6.11e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Cca04g01552 zf-B_box 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01552 - - gmx:100808889 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01552 04 22517376 22522118 Cca04g01552 04 22517376 22522118 ECH