Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca04g01546 | ATGGCGCTGTTGTGTGGTTCAACTTCGGTGACTCCATTCCTCTCTCACAAGAATGTTGTTGTCACAACTGCTTCTTCTAAATCCTCCTTTGTGGCCTTTCAATTGCCACTTCCTAAGCTTACATTGTCTTCTTCTGTTCGAACCCTTTTGCCCCAAACTTCTCGTGTCCGTTCTCAACAGGATTCTACTGCGGCGGTCGCTGAAGACCCACGCTTCGTGCGCGTCGAACCCGAACCGCGATTCAAAGGCCCGGATATTTGGAACAAGACCTGGTATCCGAAAGCTGCAGATCATGTGAATACAGAGAAAACATGGTATGTTGTTGATGCCACGGACAAAGTTCTTGGAAGACTAGCATCGACGATTGCTATTCACATCCGAGGGAAAAACTTACCAACCTACACCCCCAGTGTGGACATGGGTGCGTTTGTAATTGTGGTAAATGCAGAAAAGATTGCTGTATCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGGCACTCTGGACGACCTGGTGGTATGACTGTGGAGACATTTGCCCAACTGCAAAACAGAATTCCTGAAAGAATTGTTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGAAGGCTTGGCAGGAGACTATTCACCCACCTGAAGGTTTATAAGGGTCCAGATCATCCACATGCGGCGCAGAAGCCTGTTGAGTTGCCAATAAGGGATAAGAGAATACAATTGAGTAAATAA | 726 | 0.4669 | MALLCGSTSVTPFLSHKNVVVTTASSKSSFVAFQLPLPKLTLSSSVRTLLPQTSRVRSQQDSTAAVAEDPRFVRVEPEPRFKGPDIWNKTWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFAQLQNRIPERIVEHAVRGMLPKGRLGRRLFTHLKVYKGPDHPHAAQKPVELPIRDKRIQLSK | 241 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca04g01546 | 241 | PANTHER | RIBOSOMAL PROTEIN L13 | 57 | 238 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
Cca04g01546 | 241 | PANTHER | 50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE | 57 | 238 | - | - | |
Cca04g01546 | 241 | CDD | Ribosomal_L13 | 105 | 218 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
Cca04g01546 | 241 | TIGRFAM | rplM_bact: ribosomal protein uL13 | 99 | 230 | IPR005823 | GO:0003735|GO:0005840|GO:0006412 | |
Cca04g01546 | 241 | Pfam | Ribosomal protein L13 | 103 | 221 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
Cca04g01546 | 241 | Gene3D | Ribosomal protein L13 | 94 | 237 | IPR036899 | GO:0003735|GO:0005840|GO:0006412 | |
Cca04g01546 | 241 | SUPERFAMILY | Ribosomal protein L13 | 99 | 233 | IPR036899 | GO:0003735|GO:0005840|GO:0006412 | |
Cca04g01546 | 241 | Hamap | 50S ribosomal protein L13 [rplM]. | 105 | 240 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
Cca04g01546 | 241 | ProSitePatterns | Ribosomal protein L13 signature. | 195 | 217 | IPR023563 | GO:0003735|GO:0005840|GO:0006412 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca04g01546 | Cca-Chr4 | 22441554 | 22445222 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca04g01546 | 107 | 231 | Cytoplasmic Ribosomal Protein Gene Family | AT3G07110 | 32.540 | 1.28e-06 | 45.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca04g01546 | K02871 | - | gmx:100305981 | 438.728 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca04g01546 | 04 | 22441554 | 22445222 | Cca04g01546 | 04 | 22441554 | 22445222 | ECH |