Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01546 ATGGCGCTGTTGTGTGGTTCAACTTCGGTGACTCCATTCCTCTCTCACAAGAATGTTGTTGTCACAACTGCTTCTTCTAAATCCTCCTTTGTGGCCTTTCAATTGCCACTTCCTAAGCTTACATTGTCTTCTTCTGTTCGAACCCTTTTGCCCCAAACTTCTCGTGTCCGTTCTCAACAGGATTCTACTGCGGCGGTCGCTGAAGACCCACGCTTCGTGCGCGTCGAACCCGAACCGCGATTCAAAGGCCCGGATATTTGGAACAAGACCTGGTATCCGAAAGCTGCAGATCATGTGAATACAGAGAAAACATGGTATGTTGTTGATGCCACGGACAAAGTTCTTGGAAGACTAGCATCGACGATTGCTATTCACATCCGAGGGAAAAACTTACCAACCTACACCCCCAGTGTGGACATGGGTGCGTTTGTAATTGTGGTAAATGCAGAAAAGATTGCTGTATCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGGCACTCTGGACGACCTGGTGGTATGACTGTGGAGACATTTGCCCAACTGCAAAACAGAATTCCTGAAAGAATTGTTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGAAGGCTTGGCAGGAGACTATTCACCCACCTGAAGGTTTATAAGGGTCCAGATCATCCACATGCGGCGCAGAAGCCTGTTGAGTTGCCAATAAGGGATAAGAGAATACAATTGAGTAAATAA 726 0.4669 MALLCGSTSVTPFLSHKNVVVTTASSKSSFVAFQLPLPKLTLSSSVRTLLPQTSRVRSQQDSTAAVAEDPRFVRVEPEPRFKGPDIWNKTWYPKAADHVNTEKTWYVVDATDKVLGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFAQLQNRIPERIVEHAVRGMLPKGRLGRRLFTHLKVYKGPDHPHAAQKPVELPIRDKRIQLSK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01546 241 PANTHER RIBOSOMAL PROTEIN L13 57 238 IPR005822 GO:0003735|GO:0005840|GO:0006412
Cca04g01546 241 PANTHER 50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE 57 238 - -
Cca04g01546 241 CDD Ribosomal_L13 105 218 IPR005822 GO:0003735|GO:0005840|GO:0006412
Cca04g01546 241 TIGRFAM rplM_bact: ribosomal protein uL13 99 230 IPR005823 GO:0003735|GO:0005840|GO:0006412
Cca04g01546 241 Pfam Ribosomal protein L13 103 221 IPR005822 GO:0003735|GO:0005840|GO:0006412
Cca04g01546 241 Gene3D Ribosomal protein L13 94 237 IPR036899 GO:0003735|GO:0005840|GO:0006412
Cca04g01546 241 SUPERFAMILY Ribosomal protein L13 99 233 IPR036899 GO:0003735|GO:0005840|GO:0006412
Cca04g01546 241 Hamap 50S ribosomal protein L13 [rplM]. 105 240 IPR005822 GO:0003735|GO:0005840|GO:0006412
Cca04g01546 241 ProSitePatterns Ribosomal protein L13 signature. 195 217 IPR023563 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01546 Cca-Chr4 22441554 22445222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01546 107 231 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 32.540 1.28e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01546 K02871 - gmx:100305981 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01546 04 22441554 22445222 Cca04g01546 04 22441554 22445222 ECH