Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01542 ATGGCTACATGGAAGAAGTTGGCAACTCTAGGGAGTGGGTCATATGCTACTGTTTATCTTATTGCTTTGGATTTTCCAGACGAATCAAATCGGAAGATTGTAGCTGTGAAGAGTTCAAGTCATCTCTCTTACTCAATTGCTTCGCTGAAGAAGGAAAAGAAAATACTGGAGTTATTCAAGGGTTGCAAAGAAATCATTCAATGTTATTTTGATCAATATGCTGTTGAGAAATATGTCTCCTACAATCTTTTCATGGAACTTGCTCCTTATGGTTCTCTTGGTGAATTAATTAGGAAGAGAGGAGCAATATCTGAGGATACAGTAAGAATTTACACGCATATGCTTTTGAAAGGACTTCATTGTATTCATGAAAAAGAAGTTGTTCATTGTGATCTGAAACCAGACAACATTCTTCTGTTTCCAACATGGAAGAGTGAGACATGGTATCAAGTGAAAATTGCTGATTTTGGATTGGCCAAGACTAGAAAAGAGGCAAAAGCTGAGTTTAGGCTTAGAAAGATGAAATTTAGAGGCACACCTTATTACATGTCACCAGAATCAGTTATTGGTGTGATTGGAACTGCATTGGATATATGGTCTCTTGGATGTATTGTGATTGAAATGATCACTGGAATGGATGCATGGAGGAATATTGAAAACCAAGAGGAACTAATGTTGAAGCTTTTATTACACAAAGAAGCCCCACCAATACCTGATGGACTAAGTTGGGTTTGTAAAGATTTTTTGGGCAAGTGTTTTGTCAAGAATCCTACCCGCAGATCCACTGCTGCAATGCTTCTCAACCACCCTTTTATTATTTCTGCATATCACAATAACATGCAGACCAGCCGCACAGCTTATGAAACCTCTTCTCAATCTGTGACTAGTTCATCTTTTTTCTCATACAATCTTTTTAATTACCTATCACGAAAGCGAGTAGAGGAAAGAGGATTCACATGA 960 0.3771 MATWKKLATLGSGSYATVYLIALDFPDESNRKIVAVKSSSHLSYSIASLKKEKKILELFKGCKEIIQCYFDQYAVEKYVSYNLFMELAPYGSLGELIRKRGAISEDTVRIYTHMLLKGLHCIHEKEVVHCDLKPDNILLFPTWKSETWYQVKIADFGLAKTRKEAKAEFRLRKMKFRGTPYYMSPESVIGVIGTALDIWSLGCIVIEMITGMDAWRNIENQEELMLKLLLHKEAPPIPDGLSWVCKDFLGKCFVKNPTRRSTAAMLLNHPFIISAYHNNMQTSRTAYETSSQSVTSSSFFSYNLFNYLSRKRVEERGFT 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01542 319 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 309 - -
Cca04g01542 319 SUPERFAMILY Protein kinase-like (PK-like) 4 296 IPR011009 -
Cca04g01542 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Cca04g01542 319 ProSiteProfiles Protein kinase domain profile. 4 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01542 319 SMART serkin_6 4 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01542 319 Gene3D Transferase(Phosphotransferase) domain 1 1 316 - -
Cca04g01542 319 Pfam Protein kinase domain 5 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01542 319 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Cca04g01542 319 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 309 - -
Cca04g01542 319 CDD STKc_MAPKKK 4 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01542 Cca-Chr4 22330549 22332935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01542 4 272 MAP Kinase Kinase Kinase AT3G50310 41.429 9.91e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca04g01542 Pkinase 6.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01542 - - ccaj:109799274 566.229