Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01541 ATGTCTCATAATATTTTCATGGAACTTGCTCCTTATGGTTCTCTTGGTGAATTAATTAGAAAGGGAGGAGCACTATTCGAGGCTACCGTTAGAATTTACACACATATGCTCCTGAAAGGACTTCATTGTATTCATGAAAAAGGAGTGGTTCATTGTGATTTAAAACCATACAACATTCTTATGTTTCCAACATGGAAGAGTCAAACATGGAATCAAGTGAAGATTGCTGATTTTGGGTTGGCCAAGACTAGAGAAGAGGCAGATGCTGAGTTAGGACTTAGAAAGCTGAAATTTAGAGGAACAGCTTGTTACATGTCACCAGAATCAGTTATTGGTGTGATTGGAACTGCATTGGATATATGGTCTCTAGGGTGCATTGTAATTGAAATGATGACTGGATTGGATGCATGGAACAACATTGAAAGCCGAAAGGATCTAATGTTGAAGCTTGCATTACACAGAGAAGCACCACCAATACCTGAGGGAATGAGTTGGGTCTGTAAAGATTTTTTGAGCAAGTGTTTTGTCAAGAATCCGACACGCAGATCCACTGCCGCAATGCTTCTCAACCACCCTTTTATTAATTCTTCATATGACAATAACATGCAGACCAGCCACACAGATTATCAAACCCCTTCTCAATCTGTCACTAATTCATCTTTATTTTCATATGATCTTTTTGATTACCTACCACGTTACTAA 702 0.386 MSHNIFMELAPYGSLGELIRKGGALFEATVRIYTHMLLKGLHCIHEKGVVHCDLKPYNILMFPTWKSQTWNQVKIADFGLAKTREEADAELGLRKLKFRGTACYMSPESVIGVIGTALDIWSLGCIVIEMMTGLDAWNNIESRKDLMLKLALHREAPPIPEGMSWVCKDFLSKCFVKNPTRRSTAAMLLNHPFINSSYDNNMQTSHTDYQTPSQSVTNSSLFSYDLFDYLPRY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01541 233 Gene3D Transferase(Phosphotransferase) domain 1 2 227 - -
Cca04g01541 233 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 217 - -
Cca04g01541 233 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Cca04g01541 233 ProSiteProfiles Protein kinase domain profile. 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01541 233 SMART serkin_6 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01541 233 Pfam Protein kinase domain 4 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01541 233 SUPERFAMILY Protein kinase-like (PK-like) 4 221 IPR011009 -
Cca04g01541 233 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01541 Cca-Chr4 22323399 22324100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01541 3 230 MAP Kinase Kinase Kinase AT5G67080 40.851 2.01e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca04g01541 Pkinase 2.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01541 - - ccaj:109791498 484.952