Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01540 ATGGCTACATGGAAGAAGTTGGCAACTCTAGGGAGTGGATCTTATGCTACGGTTTATCTTAGTGCTGTGAATCTTCCAGCCGAATCAAATTGGAGGATTGTAGCTGTTAAGAGTTCAAGTCCTTTCTCTTACTCGTTTGCTTCACTCAAGAAGGAAAAGAAAATACTAGAGCTATTCAAGGGTTGCAAAGAAATCATTCAATGTTATTTTGATCAATACTCTATTGAGAAATACTATGTCTCATATAATCTTTTCATGGAACTTGCTCCTTACGGTTCTCTTGGTGAATTAATTAGGAAGAGAGGAGCACTATCTGAGGATATGGTAAGAATTTACACACATATGCTTTTGAAAGGACTTCATTGTATTCATGAAAAAGGAGTGGTTCATTGTGATCTGAAACCGGACAACATTCTTCTGTTTCCAACATGGAAGAGTGAGACATGGAATCAAGTGAAAATTGCTGATTTTGGATTGGCCAAGACTAGAGAAGAGGCAAACGCTGAGTTTGGATTTGGAAAGATGAAATTTAGAGGCACAGCATTTTACATGTCACCAGAATCAGTTACTGGGGTGATTGGAACTGCATTGGATATATGGTCTCTTGGGTGTATTGTAATTGAAATGATCACTGGAATGGATGCATGGAGGAACGTTGAAAGCCAAGAGGAACTAATGTTGAAGCTTGCATTATACAAAGAAGCCCCACCAATACCTGATGGACTAAGTTGGGTCTGTAAAGATTTTTTGGGCAAGTGTTTTGTCAAGGATCCTACCCTCAGATTCAGTGCTGCAATGCTTCTCAATCACCCTTTTATTAATTCTACATATACCAATGACATGCAGACCAGTGACACCGCTTGTCTAGCCTCTTCTCAATCTGTCACTAGTTCATCCTTTTTCACATATGATCTTTTTGATTTCCTGCCACATAATTAA 939 0.3876 MATWKKLATLGSGSYATVYLSAVNLPAESNWRIVAVKSSSPFSYSFASLKKEKKILELFKGCKEIIQCYFDQYSIEKYYVSYNLFMELAPYGSLGELIRKRGALSEDMVRIYTHMLLKGLHCIHEKGVVHCDLKPDNILLFPTWKSETWNQVKIADFGLAKTREEANAEFGFGKMKFRGTAFYMSPESVTGVIGTALDIWSLGCIVIEMITGMDAWRNVESQEELMLKLALYKEAPPIPDGLSWVCKDFLGKCFVKDPTLRFSAAMLLNHPFINSTYTNDMQTSDTACLASSQSVTSSSFFTYDLFDFLPHN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01540 312 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 301 - -
Cca04g01540 312 ProSiteProfiles Protein kinase domain profile. 4 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01540 312 SMART serkin_6 4 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01540 312 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Cca04g01540 312 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 301 - -
Cca04g01540 312 SUPERFAMILY Protein kinase-like (PK-like) 4 291 IPR011009 -
Cca04g01540 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cca04g01540 312 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Cca04g01540 312 CDD STKc_MAPKKK 4 273 - -
Cca04g01540 312 Pfam Protein kinase domain 5 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01540 Cca-Chr4 22314891 22315829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01540 4 309 MAP Kinase Kinase Kinase AT5G67080 38.095 9.65e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca04g01540 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01540 - - ccaj:109799274 494.967