Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01527 ATGGCTTTCGCTGCAGATAGCTCCATGCCCATGTCAATGCTCCTATTGTCAAATTACAAGACTTCGCCACATAATCCTAAGAGGATGACCATtttgagttcacaagatactcgaaccgcttacacccctaCCGATGGGAGTGATCCACAAACGAATAAACGGCCACTCAGAAACACAACTAGGTTTGTTCAAGTGGAGGAGATTGTTGTCACAACCTTGACTGTTGATGAAGATGTGAAGAAAATTGTTGAACATATAGTCAGCATCCAACACGAACAGCCACAAGAGCTGATAGAAAGAAATTGGAGCTCATCTTCCAACAAAGCCTTTGGAATTTTTGGAAGATTCATAACAAAATGCTTTATAAAGCCACAGCGCCCCATTGAAGACTCAAACGAAATCTACCATTTAACACCATGCGATATTACATTGTTGTCTATGAACTATATTCAAAAGGGCCTCCTCTTCAAGAAGCCCCCAGTATCCACTAATCAACAAGATTTCATCCAACACTTGTTGGATAAGATGAAGCACTCCCTTTCAATTGCACTTAACCATTTCTATCCATTAGCTGGTCGCTTTGTGACCCAAAAAACCCAAGAGCCCCCTACTTATGTTGTTTTCGTTGATTGCAAAAACAGTTGTGGAGCTAGTTTTATGTATTCAACATTGGATATGACCATATGTGACATCCTATCCCCTATTGATGCCCCACAAATTGTTCACTCATTATTTGACCATGACAAAGATGTAGTGAACCATGATGGTCACACCATGCCATTGTTGGCCATTCAAGTCACCGAGCTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCACAGCATTGCTGATGGTACTACTTTTTGGAATTTCTTCAACACATGGTCTGAGATATTTCAATTTCAAACACAAGGGCATCATGAACATGTTATTGATGTTCCCATTTTGCGAAAACCCGTTCTCAATCGTTGGTTTCCAAAGGGTTGTAGTCCTCCAATCAACCTTCCCTTCAAACATCATGATGAGTTTATCAGAAGATTTGAACCAGCTGAGCTGAGACAGAGAATCTTCCACTTCACAGCAGAGTCTATTGCCAAGTTAAAATCAAAGGCCAACATGGAATCAAGTACCACCAAAATCTCCTCATTCCAATCCTTAGCAGCACATGTTTGGAGATGCATAACTCGGGCACGTAGAGTACCATACACTGAGAGAACCACTTGCTTATTAGTTGCAAACAACAGAACAAGAATGGAACCGCCACTGCCTCAGGAGTATTTTGGAAACTGCGTTCAAAGTGTGAAAGCAGGAGCAACAGCAGAAGAATTGGATCAACATGATCTAGGATGGGCAGCATGGAAATTCCACATGGCTGTTACAAACCATAATGATAAAACAATTAAACAAGCAGCCAAAGAGTGGTTACAATCTCCTGTTGTGTATCAAACTGGTGAGCGCTATGATCAGTACACTTTGTTGTTCACTAGTTCACCAAAGTTCAACATGTATGGGAATGAGTTTGGAATGGGGAAAGCGGTGGCAGTTCTAAGTGGTTCTGCCTTCAAATTTGATGGGAAAGTTACATCTTATCAAGGATATGAAGGAGGGGGAAGCATAGATTTGGAAGTGTGCCTTTTGCCTGAAACCATGCATATGCTGGAATCAGACAATGAGTTCATGAGTACAGTTTCTTCGTCCAAGTCTAATGGTCTATACTAG 1722 0.4036 MAFAADSSMPMSMLLLSNYKTSPHNPKRMTILSSQDTRTAYTPTDGSDPQTNKRPLRNTTRFVQVEEIVVTTLTVDEDVKKIVEHIVSIQHEQPQELIERNWSSSSNKAFGIFGRFITKCFIKPQRPIEDSNEIYHLTPCDITLLSMNYIQKGLLFKKPPVSTNQQDFIQHLLDKMKHSLSIALNHFYPLAGRFVTQKTQEPPTYVVFVDCKNSCGASFMYSTLDMTICDILSPIDAPQIVHSLFDHDKDVVNHDGHTMPLLAIQVTELVDGVFIGCSMNHSIADGTTFWNFFNTWSEIFQFQTQGHHEHVIDVPILRKPVLNRWFPKGCSPPINLPFKHHDEFIRRFEPAELRQRIFHFTAESIAKLKSKANMESSTTKISSFQSLAAHVWRCITRARRVPYTERTTCLLVANNRTRMEPPLPQEYFGNCVQSVKAGATAEELDQHDLGWAAWKFHMAVTNHNDKTIKQAAKEWLQSPVVYQTGERYDQYTLLFTSSPKFNMYGNEFGMGKAVAVLSGSAFKFDGKVTSYQGYEGGGSIDLEVCLLPETMHMLESDNEFMSTVSSSKSNGLY 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01527 573 Pfam Transferase family 117 561 - -
Cca04g01527 573 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 117 563 - -
Cca04g01527 573 Gene3D - 115 332 IPR023213 -
Cca04g01527 573 MobiDBLite consensus disorder prediction 23 58 - -
Cca04g01527 573 Gene3D - 343 556 IPR023213 -
Cca04g01527 573 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 117 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01527 Cca-Chr4 21870770 21878168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01527 176 555 Monolignol Biosynthesis Gene Families AT5G48930 26.633 1.47e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01527 - - gmx:100795679 645.966