Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01507 atgagaagtaaatatgatgtgtttgtgagctttagaggtgacacacgcaacaacttcactgatcatctctttggtgccttcaaaagaagaggcattgttaccttcagggatgatacaaagctcaagaaaggtgaacccttggcacctgaattgctgcaagcaattgaagggtctcggattctgattgtgattttctcaaagaactatgcttcctcaacatggtgcttgcgagaacttgagaagatctttgattgtattcaagtcacaggaaaacgtgtttttcctattttctatgatgttgatccatctgaggtgcgcaaacagagtggagattttaagaatgcctttgacaaccatgaagaaagattcaaacatgattcatgcaagatgatggaagtgcaaagatggagggaagctctcacacaagtggccaatctctctggttgggatgtaagatacaagccacaatatgcagagattgaaaatattgtggatgagataataagtactttggatcacaaagtttcgagtcttccacctgatcttgttgggatgcaatctccggtagaagaaatagagaagcttttacttttgagctcagttgatgatgttcatgttattggaatttgcgggatgggtggaataggaaagacaactcttgctactgttttatatgacaggatttctcatcattatgatgctttctgttttattagtgatgtaagcaaaatttatagagatcatggtccaattggtgtacataagcaacttctacatcaaactctacatgatgaaaaccttcagatttgtgagcttcctaagataactaatttgatacaaaggaggctatgccatgaaagggtttttatagtttttgacaatgttgatcaaattgaacaactggaagaattagctgctaattgggaatggttaggagcagggagtaaggtcatcataatttctagagatgaccatatcctacgaatgcttaaagcatacgaagtttacaatgttcaactcttgaattgggataactctcttgaattatttttgaaaaaagcttttagatgtgatgacattacaagtgattacgaagagttgacatatgatatcctTGTTAATTGCCTAACAATCCTAAAacatgccaatggtctgcctttggcaattaaagtgttgggctcttttttatttggtcgagatatttctgagtggaaaagtgcattgtctagattgagagaaaatccaagcaaagatatcatgaatatgctgcgattaagttttgatggactagaggaaatggagaaggaaatatttcttgatattgcttgttttttcaatgggaataaggagcaatatgttaagaaggttctaaattgttgtggttttcatcctgatagtggaataagagttctcattgataaatcacttattaccatttcaaacaatttgattgaaatgcacgatttgctggaagagttgggaagaaaaattgttcaagaaaattcgcctaaagagccacaaaagtggagcaggctgtggcttgacaaatgtttctacaatgttatgttggagaatatggaaacagaatacgctgaagccatagttttgcgttgtgcaaaagaaggggaaatattgatggctgaaacactgtcaaaaatgagtcaccttagattgcttgtattgaatgatatgagttttcaaggaaatctcaagaatctttccaatgaattgaagtatctattctgggacaaatatcctttcatgtctttgccatcaagttttcggccacacaaccttgttgaattaatcctaccccacagtggcatcaaacaattatgggaaggcacaaagcaacctctacaaaatttgaaatgtatggatctctcacactccacaaatcttatcaagatgccatgctttggagaggtaccaaatctcgagtcactaattcttgaaggatgtacaaaacttgagaagatagattcatccattggtcttctaaaaaaacttattctcttgaatttgaaaaactgtaagagtctAGCATGTATACCTAAAAGCATACTGGACCTCTGTTCTCTTGAATATCTAAATCTATCTGGCTGTTCAAAGGAATTAGATAAAGGTTTCTTTTAttgcttgttgccttccttgcgttgtttgagagaccttgacattagcttttgcaatctaagccaaatccctcatggcattggatgcttacattgtttagaaagattaaacttaggaggaaacgattttgttacactaccttgtagcctaaaggaactttgcaatcttgtatatttgaacctagagcattgcaaacagttgaagtgtttgcctgagctccctgtacacacttgcttgccaataagaagagaagttccttggggtataaggcgaccaggcttatatattttcaactgcccaaaattgggtgagagggaaagatgttgtagcatgaccttttcatggatgagacaaatgcttcagGTGAATCAAGAAACCCTTGCCCCCTTTGATGATATTGATATTATTATTCCTGGGTtatttgCAGTTTATCCAACTAATTTGAGAAATGAATGTGAACCCTCTATGAGGATAGGTTTCCAGAAAAGGAGTGGCAAGTTTACCACAATTCCAGTAACTCTCAATAGAGATCTGATCTCGTTTGAACTAGATCACATATGGATATTCTATTTCACTAGGGAAGAATTCATTGATATTATGAGTCATATGAGTGGCAAAACTGAAGAATCACATGATTTTGATGGTATCAAATTGACAACAGTAATCAGGCATGGGCAAGGTTTGTATTTGGAGGAAACTAGTCAGAGTAAATTCCTCTTGTTTGTTGGAATAAGGTTTGCTCCAAAGGAAATTGATCAATCAAACCTCGTTGAAGAAGGTCTTGAAAGAAACCAAGTGCCAGCAGCAGAACTGTATTGGACAAAGGGGTTGGATAAAAAGGTGCAACAAGAGGAATATGTCAAATTCAATGTTGTTGTGAAGGTTGTGGTACCACAAGGGGTTGACAACCTAAAACCCCTGACATTATCAAAAAGAAAATCTTCTCAGATGGGGAATAAATTCTCTCATGTGGAATTTTCACTTAGATTCTCTTCGATTCTCAACACTACAAACAACACTATTTGGTCTTCCAACATACCAACCAAAGCAGTGAATAATCCAATTGCTAATCTTTTGGATTCGGGAAATTTTGTAGTGAGAAATGGACAGGAAACCAACAGTAACACTGTGTTCTGGGAGAGTTTTGATTATCCAGGTGATACATTGATGCCGGGAATGAAATATGGATGGAACTTGGAGACTTGTCTAGAAAGATATTTATCGTCTTGGAAAAGTGAAGAAGATCCTGCTGAGGGAGAGTATGCTGCAAAAGTTGATCTCAGAGGATATCCTCAAACAATTATGTTaaagtag 3447 0.1137 MRSKYDVFVSFRGDTRNNFTDHLFGAFKRRGIVTFRDDTKLKKGEPLAPELLQAIEGSRILIVIFSKNYASSTWCLRELEKIFDCIQVTGKRVFPIFYDVDPSEVRKQSGDFKNAFDNHEERFKHDSCKMMEVQRWREALTQVANLSGWDVRYKPQYAEIENIVDEIISTLDHKVSSLPPDLVGMQSPVEEIEKLLLLSSVDDVHVIGICGMGGIGKTTLATVLYDRISHHYDAFCFISDVSKIYRDHGPIGVHKQLLHQTLHDENLQICELPKITNLIQRRLCHERVFIVFDNVDQIEQLEELAANWEWLGAGSKVIIISRDDHILRMLKAYEVYNVQLLNWDNSLELFLKKAFRCDDITSDYEELTYDILVNCLTILKHANGLPLAIKVLGSFLFGRDISEWKSALSRLRENPSKDIMNMLRLSFDGLEEMEKEIFLDIACFFNGNKEQYVKKVLNCCGFHPDSGIRVLIDKSLITISNNLIEMHDLLEELGRKIVQENSPKEPQKWSRLWLDKCFYNVMLENMETEYAEAIVLRCAKEGEILMAETLSKMSHLRLLVLNDMSFQGNLKNLSNELKYLFWDKYPFMSLPSSFRPHNLVELILPHSGIKQLWEGTKQPLQNLKCMDLSHSTNLIKMPCFGEVPNLESLILEGCTKLEKIDSSIGLLKKLILLNLKNCKSLACIPKSILDLCSLEYLNLSGCSKELDKGFFYCLLPSLRCLRDLDISFCNLSQIPHGIGCLHCLERLNLGGNDFVTLPCSLKELCNLVYLNLEHCKQLKCLPELPVHTCLPIRREVPWGIRRPGLYIFNCPKLGERERCCSMTFSWMRQMLQVNQETLAPFDDIDIIIPGLFAVYPTNLRNECEPSMRIGFQKRSGKFTTIPVTLNRDLISFELDHIWIFYFTREEFIDIMSHMSGKTEESHDFDGIKLTTVIRHGQGLYLEETSQSKFLLFVGIRFAPKEIDQSNLVEEGLERNQVPAAELYWTKGLDKKVQQEEYVKFNVVVKVVVPQGVDNLKPLTLSKRKSSQMGNKFSHVEFSLRFSSILNTTNNTIWSSNIPTKAVNNPIANLLDSGNFVVRNGQETNSNTVFWESFDYPGDTLMPGMKYGWNLETCLERYLSSWKSEEDPAEGEYAAKVDLRGYPQTIMLK 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01507 1148 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 149 IPR035897 -
Cca04g01507 1148 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 704 IPR044974 GO:0006952
Cca04g01507 1148 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 726 810 IPR044974 GO:0006952
Cca04g01507 1148 Gene3D - 172 337 IPR027417 -
Cca04g01507 1148 Pfam Leucine Rich Repeat 598 617 IPR011713 -
Cca04g01507 1148 Gene3D - 341 431 IPR042197 -
Cca04g01507 1148 Gene3D - 1032 1130 - -
Cca04g01507 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 441 IPR027417 -
Cca04g01507 1148 Pfam TIR domain 4 177 IPR000157 GO:0007165
Cca04g01507 1148 SUPERFAMILY L domain-like 486 826 - -
Cca04g01507 1148 Pfam D-mannose binding lectin 1044 1122 IPR001480 -
Cca04g01507 1148 Gene3D - 1 171 IPR035897 -
Cca04g01507 1148 PANTHER TMV RESISTANCE PROTEIN N-LIKE 726 810 - -
Cca04g01507 1148 SUPERFAMILY alpha-D-mannose-specific plant lectins 1044 1127 IPR036426 -
Cca04g01507 1148 Gene3D Ribonuclease Inhibitor 709 832 IPR032675 -
Cca04g01507 1148 Gene3D Ribonuclease Inhibitor 536 708 IPR032675 -
Cca04g01507 1148 ProSiteProfiles TIR domain profile. 3 171 IPR000157 GO:0007165
Cca04g01507 1148 PANTHER TMV RESISTANCE PROTEIN N-LIKE 10 704 - -
Cca04g01507 1148 Pfam NB-ARC domain 187 417 IPR002182 GO:0043531
Cca04g01507 1148 PRINTS Disease resistance protein signature 282 296 - -
Cca04g01507 1148 PRINTS Disease resistance protein signature 206 221 - -
Cca04g01507 1148 PRINTS Disease resistance protein signature 382 396 - -
Cca04g01507 1148 PRINTS Disease resistance protein signature 618 634 - -
Cca04g01507 1148 SMART till_3 4 146 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01507 Cca-Chr4 21492184 21508376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01507 5 783 WRKY Transcription Factor Family AT4G12020 32.456 2.01e-92 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01507 - - ccaj:109818165 1897.86