Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01499 ATGTCGCATTCCGGGAACCCCATCTCCGAGTTAGGGCTCAGCGACCGCTTCCGCGACTCACTGAGTTGCTCCGACGACACCAACAAGCCCGATTTCCGAGAACTCGATTTGGGTTCGCCGGTTTCCACATTGCGCCATCGCCACAGCACCGCCGCCACGagcagcagcagcagcagcagcggcTCAATCGGGTCGGGTCCGGGTCGAAACGGGAACGCCGCGGTTTCCAAGAGATCCCATTCCGGCGAGTTGTCAAACTCCGGCGAGATCAGCAGTCCGAAACCGGGTCACCGGCGATCCAATTCGGGTCAGAGTTTGAGTCAGAGATCTCCGTCGTCGTCCTCCGCAGCCGTGAATTCGCCGCCGCTGAACGTTCTCCCGGCGGGGAACATTTGCCCCTCCGGGAGGGTCCTCAAGGCGGCGACGACACCGGCGGCGGTGAGCCGGAGCTCCCGGAGCGATGTCCTCGGCTCCGGCACCGGGAATTACGGCCACGGGAGCATAATGCGCGGCGGAAGAGGCGGCGGAGGTGGAGATTCGGCGAGTGCGAGGATCGCCGGAGACTCGGTGAAGCGCGTGGATCCGGAGGAGGTGAAGAGAATGGGGAATGAGGAGTATAAAAGAGGGCGTTTTTCTGAGGCGTTGTGTCTCTATGATCGGGCAATTGCGATTTCTCCGGGCAATGCTGCTTACCGGAGCAACCGCGCCGCGGCGTTGACCGGCTTGGGACGGTTGCCGGAGGCGGTGAGGGCGTGTCAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGGTTGGCAATGCTCTTTCTAAGGTTAGGACTCGTTGAGGATGCCAGGAAGCACCTTTGTTATCCTGGGCTGCAGCCGGGTCCTTTGGAGATGCAGAAGTTGCAGATTGTGGAAAAGCATATTGGCAAATGCGCGGATGTACGGAGGATTCGAGATTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTGTTGTTGCTGGAGCAGACTCTTGTTTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCTACACCAGATGGATGATGCCGAATCGAGTCTCTCAGGGATTCCCAAATGTGAGCGGCATCTTGGTTCGTTATCGCAGGCAAGATTTTTCGGGATGATTTCTGAGGCTTATTGCTATTTTGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTCACAGCTGCTGAGAAAGCTAGTCAGATTGATCCCCGAAACGTTGAAGTTGCTGTCTTGCTCAACAATGTGAGGATGGTGGCTAGAGCGCGATTGCGTGGTAATGATCTTTTCAAATCAGAAAGGTTCACGGAGGCTTGCTCGGCTTATGGGGAAGGTTTGAGGCTTGACCCTTCAAACTCTGTTCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTATGCATCCATCCAAATTACACAAAAGCAATTCTTCGAAGGGCTGCCTCAAATAGCAAGCTAGAAAGGTGGGAAGAAGCAGTAAAGGATTATGAGCACTTGCGACGAGAACTACCAGATGACAATGAAGTTGCCGAAGCTCTGTTTCATGTGCAAGTAGCATTGAAGAAATCTCGTGGGGAAGAAGTACATAATTTAAAGTTTGGTGGTGATGTGGAGGACATATCGAGTCTTGAGCAATTTAGAGCTGCAATATCCTTACCAGGTGTTTCTGTTGTCCATTTTAAAACTGCATCCAACTTGCAATGTAAACAAATATCGCCATTCGTGGATACGCTATGTAGTCGCTATCCATCTATTAGCTTCCACAATGTGGATATTCAAGCAAGCCCCGCAGTCGCCACTGCTGAGAATGTTAGGATTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAATGAAGGAAATTGTATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG 2004 0.5105 MSHSGNPISELGLSDRFRDSLSCSDDTNKPDFRELDLGSPVSTLRHRHSTAATSSSSSSSGSIGSGPGRNGNAAVSKRSHSGELSNSGEISSPKPGHRRSNSGQSLSQRSPSSSSAAVNSPPLNVLPAGNICPSGRVLKAATTPAAVSRSSRSDVLGSGTGNYGHGSIMRGGRGGGGGDSASARIAGDSVKRVDPEEVKRMGNEEYKRGRFSEALCLYDRAIAISPGNAAYRSNRAAALTGLGRLPEAVRACQEAVGLDPNYGRAHQRLAMLFLRLGLVEDARKHLCYPGLQPGPLEMQKLQIVEKHIGKCADVRRIRDWKSVLREVDAAVVAGADSCFQLFMCRAEALLKLHQMDDAESSLSGIPKCERHLGSLSQARFFGMISEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALCIHPNYTKAILRRAASNSKLERWEEAVKDYEHLRRELPDDNEVAEALFHVQVALKKSRGEEVHNLKFGGDVEDISSLEQFRAAISLPGVSVVHFKTASNLQCKQISPFVDTLCSRYPSISFHNVDIQASPAVATAENVRIVPTFKIYKNGSRMKEIVCPSHDMLEHSIRHYSL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01499 667 Pfam Tetratricopeptide repeat 389 420 IPR019734 GO:0005515
Cca04g01499 667 MobiDBLite consensus disorder prediction 144 160 - -
Cca04g01499 667 MobiDBLite consensus disorder prediction 142 189 - -
Cca04g01499 667 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Cca04g01499 667 ProSiteProfiles TPR repeat profile. 387 420 IPR019734 GO:0005515
Cca04g01499 667 MobiDBLite consensus disorder prediction 1 124 - -
Cca04g01499 667 CDD TRX_family 572 653 - -
Cca04g01499 667 SUPERFAMILY TPR-like 195 423 IPR011990 GO:0005515
Cca04g01499 667 Pfam Tetratricopeptide repeat 201 261 - -
Cca04g01499 667 Gene3D Tetratricopeptide repeat domain 193 553 IPR011990 GO:0005515
Cca04g01499 667 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 10 665 IPR044534 -
Cca04g01499 667 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 10 665 - -
Cca04g01499 667 Pfam Thioredoxin 572 660 IPR013766 -
Cca04g01499 667 SMART tpr_5 387 420 IPR019734 GO:0005515
Cca04g01499 667 SMART tpr_5 229 262 IPR019734 GO:0005515
Cca04g01499 667 SMART tpr_5 501 534 IPR019734 GO:0005515
Cca04g01499 667 SMART tpr_5 195 228 IPR019734 GO:0005515
Cca04g01499 667 SMART tpr_5 467 500 IPR019734 GO:0005515
Cca04g01499 667 SMART tpr_5 433 466 IPR019734 GO:0005515
Cca04g01499 667 MobiDBLite consensus disorder prediction 19 33 - -
Cca04g01499 667 Gene3D Glutaredoxin 559 666 - -
Cca04g01499 667 MobiDBLite consensus disorder prediction 43 121 - -
Cca04g01499 667 SUPERFAMILY TPR-like 437 550 IPR011990 GO:0005515
Cca04g01499 667 Pfam Tetratricopeptide repeat 469 500 IPR001440 GO:0005515
Cca04g01499 667 Coils Coil 507 527 - -
Cca04g01499 667 SUPERFAMILY Thioredoxin-like 570 653 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01499 Cca-Chr4 21290129 21294158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01499 432 577 U-box Gene Family AT3G07370 28.962 3.43e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01499 - - gmx:100805790 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01499 04 21290129 21294158 Cca04g01499 04 21290129 21294158 ECH
Cca04g01499 04 21290129 21294158 Cca10g00938 10 10844824 10847943 PCT