Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01496 ATGTGGAAGACAACAGCACCGACTGAACGGCTACAGCACCGACTTAGCGGCTATAACAGCACCACAATAGTGGCTAATAGCACCGACATAGCGATACTTCGCGATGGAAAATGGAGTGAAGAAGAAGCTTCAGTGTTGGTTCCTGGAGACATAATTAGCATCAAGCTTGGTGACATCATTCCTGCTGATGCACGTCTCCTTGAAGGCGATCCTTTGAAGATTGATCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTCACCAAAAATCCTGAAGATGGAGTATATTCTGGTTCAACTTGCAAGCAAGGAGAAATTGAGGCAGTAGTTATTGCAACCGGAGTTCACACCTTTTTCGGGAAGGCAGCTCATCTTGTGGAAAACACAACACATATTGGACATTTCCAGAAGGTTCTAACATCTATTGGGAACTTCTGCATCTGTTCAATTGCTGTTGGCATtagtcattttcctacgaattttcctgcaaaaaaatattcAGGCATCCCTATTGCAATGCCAATTGTTCTTTCTGTTACAATGGCTATTGGTTCACACAAGTTGGCTCAGCAGGGTGCCATAACAAAGAGAATGACTGCCATTGAAGAGATGGCTGGAATGGATGTGTTATGTAGTGACAAAACAGGAACATTAACTCTTAACAAGCTTTCTGTGGACAAGAATATCATTGAGGTTTTTGTTAAAGATGTGGACAGTGATATGGTTGTACTTATGGCTGCAAGAGCATCAAGGCTAGAGAACCAAGATGCAATTGATTGTGCTATAGTTTCAATGTTGGCAAACCCAAAGGAGGCACGAGCCGGAATACAAGAAGTTCACTTCTTTCCATTCAATCCAACGGATAAAAGAACTGCACTTACATACATTGATGCTGCTGGTAAAATGCGCAGGGTTAGCAAAGGTGCACCAGAGCAGATTCTCAATCTTGCATATAACAAATCAGAAATCCAACAGAGGGTTCATGCAATTATTGAGAAGTTTGCAGAACGTGGACTTCGTTCTCTTGCAGTTGCCCGCCAGGAAGTACCTGAGGGAACTAAAGACAGTCCTGGAGGACCATGGGAGTTTGTTGGCCTTCTCCCTCTTTTTGATCCTCCTCGTCATGATAGTGCAGAAACAATTAGAAGAGCTCTAGATCTTGGCGTGAGTGTCAAAATGATCACTGGTGATCAACTTGCAATAGGTAAGGAAACAGGAAGACGTCTAGGGATGGGCACCAACATGTATCCTTCTTCATCACTGCTGGGTGAAAATAAAGATGGATTGGGCGCTGTTGCCGTTGATGATCTCATTGAGAATGTTGATGGTTTTGCTGGAGTCTTTCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGTTAGAAAGCACATTTGTGGGATGACTGGTGATGGGGTGAATGATGCACCTGCCCTAAAGATAGCAGACATTGGTATTGCTGTAGCAGATGCTACAGATGCTGCCAGAAGTGCTTCTGACATAGTCCTAACAGAACCTGGGTTGAGTGTGATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAATTACACTGTAATCCATCTACTCCTGTCGACATATGAAAGTCTTGGTTTCATGTTACTGAACAGCTTTTGGAAATTTGACTTTCCTCCCTTTATGGTTCTTGTCATTGCCATTCTCAATGATGGTACCATCATGACAATATCTAAAGATAGGGTTAAGCCTTCTCCAGTTCCTGATAGTTGGAAGCTTAGTGAAATTTTTACAACTGGGATTGTTCTTGGTAGCTATCTGACTCTAATGACTGTGATCTTCTTCTATATAGCTGTCGAAACAAATTTCTTTCCTAACCATTTTGGTGTGAAACACTTTCACTATGATCCAGAAGCTCCTAACGGTGATCCAACGAATACAATGTTGGGATCTGCTGTCTATCTTCAAGTTAGTACAATTAGTCAAGCCTTAATTTTCGTGACACGATCAAGGGGTTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTGTCACTGCCTTCATCATTGCTCAAGCGATTGCAACTGTTATATCTGCCACTCTCACTTGGAAAGTTGCTGGGATCACACGTATTGGTTGGGGCTGGACAGGAGTGATTTGGCTATACAATATTGTAACTTACCTATTTCTAGATCCTTTAAAGTTTGCAGTTCGCTATGCATTAAGTGGAAGGGCTTGGAATCTGGTGGTAGACCAAAGAACTGCATTCATCAACAAAAATGACTTCGGTAGAGAAGCTCGTGAGGCTGCATGGGCTACTGAGCAGAGAACCTTACATGGCCTCCACTCTGTTGAGTCAAAAGGGATGACAGAGAAGCACCACACCTTCAGAGAAATTAATACATTGGCAGAAGAGGCTAGGAGGCGAGCAGAGATAGCAAGGCTGAGAGAGCTTCACACTCTGAAAGGCAGAGTGGAATCATTTGCCAAGCTAAGGGGTTTGGACATTGATGCAATGAACGGACACTACACTGTCTAA 2523 0.4253 MWKTTAPTERLQHRLSGYNSTTIVANSTDIAILRDGKWSEEEASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPEDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHIGHFQKVLTSIGNFCICSIAVGISHFPTNFPAKKYSGIPIAMPIVLSVTMAIGSHKLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNIIEVFVKDVDSDMVVLMAARASRLENQDAIDCAIVSMLANPKEARAGIQEVHFFPFNPTDKRTALTYIDAAGKMRRVSKGAPEQILNLAYNKSEIQQRVHAIIEKFAERGLRSLAVARQEVPEGTKDSPGGPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDGLGAVAVDDLIENVDGFAGVFPEHKYEIVKRLQVRKHICGMTGDGVNDAPALKIADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTVIHLLLSTYESLGFMLLNSFWKFDFPPFMVLVIAILNDGTIMTISKDRVKPSPVPDSWKLSEIFTTGIVLGSYLTLMTVIFFYIAVETNFFPNHFGVKHFHYDPEAPNGDPTNTMLGSAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVTAFIIAQAIATVISATLTWKVAGITRIGWGWTGVIWLYNIVTYLFLDPLKFAVRYALSGRAWNLVVDQRTAFINKNDFGREAREAAWATEQRTLHGLHSVESKGMTEKHHTFREINTLAEEARRRAEIARLRELHTLKGRVESFAKLRGLDIDAMNGHYTV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01496 840 SFLD Haloacid Dehalogenase 192 519 - -
Cca04g01496 840 Gene3D - 28 112 - -
Cca04g01496 840 PANTHER PLASMA MEMBRANE ATPASE 30 820 - -
Cca04g01496 840 Gene3D - 113 703 - -
Cca04g01496 840 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 29 694 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cca04g01496 840 Gene3D - 207 505 IPR023214 -
Cca04g01496 840 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 26 230 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g01496 840 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 442 544 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g01496 840 Pfam haloacid dehalogenase-like hydrolase 206 482 - -
Cca04g01496 840 Gene3D - 789 840 - -
Cca04g01496 840 SUPERFAMILY HAD-like 206 515 IPR036412 -
Cca04g01496 840 SUPERFAMILY Calcium ATPase, transmembrane domain M 125 736 IPR023298 -
Cca04g01496 840 Gene3D - 222 369 IPR023299 GO:0000166
Cca04g01496 840 PRINTS P-type cation-transporting ATPase superfamily signature 491 503 - -
Cca04g01496 840 PRINTS P-type cation-transporting ATPase superfamily signature 210 224 - -
Cca04g01496 840 PRINTS P-type cation-transporting ATPase superfamily signature 468 487 - -
Cca04g01496 840 PRINTS P-type cation-transporting ATPase superfamily signature 75 89 - -
Cca04g01496 840 PRINTS P-type cation-transporting ATPase superfamily signature 364 375 - -
Cca04g01496 840 PRINTS P-type cation-transporting ATPase superfamily signature 386 396 - -
Cca04g01496 840 SUPERFAMILY Calcium ATPase, transduction domain A 30 125 IPR008250 -
Cca04g01496 840 SFLD p-type atpase 192 519 IPR044492 -
Cca04g01496 840 Pfam E1-E2 ATPase 31 190 - -
Cca04g01496 840 ProSitePatterns E1-E2 ATPases phosphorylation site. 212 218 IPR018303 -
Cca04g01496 840 CDD P-type_ATPase_H 32 730 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cca04g01496 840 PRINTS H+-transporting ATPase (proton pump) signature 440 456 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g01496 840 PRINTS H+-transporting ATPase (proton pump) signature 499 524 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g01496 840 PRINTS H+-transporting ATPase (proton pump) signature 649 670 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g01496 840 PRINTS H+-transporting ATPase (proton pump) signature 326 344 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g01496 840 PRINTS H+-transporting ATPase (proton pump) signature 468 484 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca04g01496 840 PANTHER CALCIUM-TRANSPORTING ATPASE 30 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01496 Cca-Chr4 21118585 21131035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01496 32 840 Primary Pumps ATPases AT5G62670 74.788 0.0 1263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01496 K01535 - gmx:100794938 1412.9