Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01482 ATGGAGGAATCAcaccaccaccaccatcgccaagcaccaacaccGTCGAGAGCGGCGATGAGAGGCGGCAGCGGCAACGGCGAGATTGTCGAGGTGCAAGGCGGCCACATTGTCCGCTCCACCGGGAGAAAAGACCGCCACAGCAAGGTCTGCACCGCCAAAGGCCCCCGCGACCGCCGTGTGCGCTTGGCGGCGCATACGGCCATCCAATTCTACGACGTCCAGGACCGCCTCGGCTTCGACCGCCCCAGCAAGGCGGTCGATTGGCTCATCAAAAAAGCCAAGGCGGCCATCGATCAGCTCGCAGAGCTCCCACCATGGAATCCTGCGAGCTCGATGCAGCCACCTCAGCAGCAGGAAGTCATCCATCGCGAGAACAAGTCTCTCGCGATGGAAGACAGGAAAGACTCCATAATTGCCTTTGGCAGCCGCGGTGAGAGAGACTCTCTCACCGCGGATACTGCTGGGAGAGTTCCAGAATTCTCCCACCAATTAGAGAGTGAAAATGGCAACAACATGAGCAACAAGTACAACAGTGGTTCTGGCTTTCTGCCAGCGTCGTTGGACACTGACAACATTGCGGAAACGATTAAGTCTTTTTTTCCCGTGGAGGCGACTACGACGTCGTTTCAGAGCTACCCTCCGGCGCCGTCGGATTTGGGACAGCAAGATCTGCGGCTCTCGTTGCAGTCCTTTCAGGACCCAATTATGCTTCACCACCAGCCTCAGAGCCACCACGAGCCGGTGCTCTTCGCCGGAACCGCCGCCGCGGCGTTAGGCTTCGACGGTGGTTCGGCGTGGTCAGAGCACCAGCAGCACCACTCAGAGGAACAGAGATTGCTTTATTCTGGTAACAGTGGCCACGGCGGCGGATTCGTGTTCAACTCGCCGGCGCCGGCGTTTGGCCAGTTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACTCCTTCGGTTCGTGCTTGGATAGACCCTTCGGTCGATcaccatcaccaccaccatcatcacTATCTCTCGCCGTTAATCCACCAGGGTTCCGTCGCCGGAGGCGGCGGTGGCGGTGGATTTTCCGCCGCCGCCGGTGGGTTCTCCGGCTTCCGCATTCCAGCACGAATTCAGGGTGAAGAGGAGCACGACGGCTTATCCGACAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCATTGA 1185 0.562 MEESHHHHHRQAPTPSRAAMRGGSGNGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKAAIDQLAELPPWNPASSMQPPQQQEVIHRENKSLAMEDRKDSIIAFGSRGERDSLTADTAGRVPEFSHQLESENGNNMSNKYNSGSGFLPASLDTDNIAETIKSFFPVEATTTSFQSYPPAPSDLGQQDLRLSLQSFQDPIMLHHQPQSHHEPVLFAGTAAAALGFDGGSAWSEHQQHHSEEQRLLYSGNSGHGGGFVFNSPAPAFGQFFSQRGPLQSSNTPSVRAWIDPSVDHHHHHHHHYLSPLIHQGSVAGGGGGGGFSAAAGGFSGFRIPARIQGEEEHDGLSDKPSSASSDSRH 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01482 394 MobiDBLite consensus disorder prediction 371 394 - -
Cca04g01482 394 MobiDBLite consensus disorder prediction 1 56 - -
Cca04g01482 394 Pfam TCP family transcription factor 42 149 IPR017887 -
Cca04g01482 394 MobiDBLite consensus disorder prediction 38 56 - -
Cca04g01482 394 ProSiteProfiles TCP domain profile. 43 101 IPR017887 -
Cca04g01482 394 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 394 IPR005333 GO:0003700
Cca04g01482 394 PANTHER TRANSCRIPTION FACTOR TCP4 7 394 - -
Cca04g01482 394 MobiDBLite consensus disorder prediction 367 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01482 Cca-Chr4 20711667 20714666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01482 8 394 TCP Transcription Factor Family AT1G53230 48.219 1.43e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca04g01482 TCP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01482 - - gmx:100800275 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01152 10 14763459 14765382 Cca04g01482 04 20711667 20714666 ECH
Cca10g00920 10 10637161 10640613 Cca04g01482 04 20711667 20714666 ECH
Cca04g01482 04 20711667 20714666 Cca04g01482 04 20711667 20714666 ECH