Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01481 atgtcaggcgtgaagagaaccacgccgggcgcgatattagataatggcttggatgCAACCACTCGTTCGTTTGTGTCTGCTTTTGCTACTTTGCCTGGTATAGAAATGAGTCCAAAGAAATGGTTTAAGATGATCATTAAATTGAAGAAACCGAAGATAGATAAATCGAAACAAGAAAAGGTGCAATCTAGCCCTGAAAAATCAAATGAGTCCTTTGAGGAGAAACAAGAAGATATTAATGAAGAGTCAAGTAGCATTCCAAGTGAGTGTTTAGTGGTAGAAAGGATAGAAAGGACAGTTCCCACGAGGTTGATAGAAGATACTGCTGCTACTCGGATTCAAAATGCATTTCGTGCATTTCTGGCAAGAAGAACATTGCACCATCTAAGGGGAGCAGTGAAATTTGAGGCTTTGATTCAAGATCACATGGCCAGAGAACAAACAGTAACTGCGCTAAACTACATACATTCTTGGAGCAGAATTCAGGATCAGATTAAGGCTCGCAGACTCTACATGATAACAGAAGCCAGGATTAAGCAAAAGAAACTGGAGAACCAGTTAAAACTTGAGGCCAAGATTCATGAGCTCCAGGTGGAATGGTGTGGAGGTTCTGAAACAATGGAAGAGATACTTTCGAGGATACATCAGAGAGAAGAAGCAGCAGTCAAACGAGAGAGAGCTATGGCATATGCCTTCTCTCATCAGTGGAGGCCCAACTGCAGCCAGTATTTGGGCCAGGCTACGTACAGCGTTGGCAAGGAAAGCTGGGGTTGGAGCTGGCAGGAGAGGTGGGTCGCAGCCCGTCCTTGGGAAATCCGGGTCCGTTTTCAGGGCCCCATGACAAAGAAAACCAATGGCCAGCCACAGAGAAGCAAAGTAGACAAAAAAGACCAAAATGATAGCAAATTGCCCTTGTCTGAGTCTGAGTTGTCAAACGGAAAGGAAACTGAGAAAGTGAAAGAAAACAACATTCCAGGGCTGTCTAAGAACAATCTAGCCAAATGA 1005 0.4139 MSGVKRTTPGAILDNGLDATTRSFVSAFATLPGIEMSPKKWFKMIIKLKKPKIDKSKQEKVQSSPEKSNESFEEKQEDINEESSSIPSECLVVERIERTVPTRLIEDTAATRIQNAFRAFLARRTLHHLRGAVKFEALIQDHMAREQTVTALNYIHSWSRIQDQIKARRLYMITEARIKQKKLENQLKLEAKIHELQVEWCGGSETMEEILSRIHQREEAAVKRERAMAYAFSHQWRPNCSQYLGQATYSVGKESWGWSWQERWVAARPWEIRVRFQGPMTKKTNGQPQRSKVDKKDQNDSKLPLSESELSNGKETEKVKENNIPGLSKNNLAK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01481 334 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Cca04g01481 334 MobiDBLite consensus disorder prediction 55 86 - -
Cca04g01481 334 MobiDBLite consensus disorder prediction 288 303 - -
Cca04g01481 334 Coils Coil 179 199 - -
Cca04g01481 334 MobiDBLite consensus disorder prediction 276 334 - -
Cca04g01481 334 MobiDBLite consensus disorder prediction 55 82 - -
Cca04g01481 334 PANTHER IQ-DOMAIN 10 36 323 - -
Cca04g01481 334 PANTHER IQ-DOMAIN 5-RELATED 36 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01481 Cca-Chr4 20702532 20709625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01481 102 315 IQD Protein Family AT3G15050 58.411 1.08e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01481 - - gmx:100810603 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01151 10 14757552 14761567 Cca04g01481 04 20702532 20709625 ECH
Cca04g01481 04 20702532 20709625 Cca04g01481 04 20702532 20709625 ECH