Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01475 ATGGCGAAAACGAGGCCAGGAAGAAAGGACTTGGACTCCTACACCATAAGAGGAACCAACAAGATCGTGCGAGCTGGTGACTGCGTTTTGATGCGGCCCCAGGACACCACGAAGCCCCCTTACGTGGCACGTGTGGAGAAGATCGAGCAGGACAACAGGAACAACGTGAAGGTGCGTGTGAGGTGGTACTATAGGCCTGAAGAGTCGATTGGGGGTCGCAGGCAGTTTCATGGGGCTAAGGAGCTTTTTCTGTCTGACCACTATGATGTGCAGAGTGCTCACACCATTGAAGGGAAGTGTGTGGTGCACTCTTTCAAGAACTACACTAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCTACTGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCATATAACTCGGATGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGTATCATCCTGCCTGTATGGGCATGACTATTGAAGAAGCAAAAAAACTAGACCATTTTGTATGTTCCGAATGTTCATCTGATGATGATATGAAGAAATCTCAAGCGACATTTTCTATATCACCGGTACCTGATAACAAGGTGGAGCACAAGCGGCGGAAGAGATGA 651 0.4839 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPQDTTKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNSDDLMVQCEGCKDWYHPACMGMTIEEAKKLDHFVCSECSSDDDMKKSQATFSISPVPDNKVEHKRRKR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01475 216 PANTHER OS08G0421900 PROTEIN 3 212 - -
Cca04g01475 216 Pfam BAH domain 23 135 IPR001025 GO:0003682
Cca04g01475 216 PANTHER BNAC03G64850D PROTEIN 3 212 IPR045205 GO:0006325|GO:0035064
Cca04g01475 216 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Cca04g01475 216 SMART BAH_4 21 136 IPR001025 GO:0003682
Cca04g01475 216 CDD BAH_BAHCC1 22 156 - -
Cca04g01475 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 199 IPR013083 -
Cca04g01475 216 Gene3D - 2 134 IPR043151 -
Cca04g01475 216 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Cca04g01475 216 Pfam PHD-finger 140 188 IPR019787 -
Cca04g01475 216 SMART PHD_3 140 187 IPR001965 -
Cca04g01475 216 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Cca04g01475 216 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01475 Cca-Chr4 20587252 20591435 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01475 41 132 Core DNA Replication Machinery Family AT4G14700 30.108 5.89e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca04g01475 BAH 5.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01475 K25868 - gmx:100800993 436.417