Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01472 GGACTTATCATATAACAACTTAAGCGGGAGTCTCCCTTCTTGGGTCACTGAACAAAATTTGCAAATTAATTTAGTTGGCAACAACTTTCAAGCAAAGGATATAGAGAACAGTGTTATTCCTTCAGGACTTAGATGCCTTCAGCGTAACTTTCCTTGCAATCGTGGCACCGGAGTTTATTACAATTTTTCAATCAACTGTGGTGGTCCTGAAATTTTATATTCAAATGGAGTTGTCTATGAAAGTGATAATGAGAAACTTGGTCCAGCTACATATTTTGTGACAAAAACGCAGAGGTGGGCAGTTAGTAATGTGGGGTACTTTACTGGAAGTAGCGGTTTGAGTATGTATACAAGTTATGTTCCAAATAAATTCGTTGGCACTTTAGATTCCAACATGTTCCAAACAGCACGACTATCTGCTTCATCATTGAGATACTATGGCCTGGGACTTGAAAATGGTAATTACAATGTGACGCTTCAGTTTGCTGAAAGTAAGATTCTGGATTCTTCCTCATGGAAAAGCACTGGGAGGCGAATCTTTGATGTTTACATCCAGGGGAATCTTGTTTTAAAGGATTTTGATATACAAAAGGAAGCTGGTAAGGTTTCTTTCAAAGCTGTCCCAATGGAATTTAAAGCTCAAGTAGTGGAAAACTACCTTGAGATCCACCTTTTTTGGGCTGGAAAAGGGACTTGTTGTATACCTGATGAATACACTTATGGACCATTAATTTCAGCCATCAGTGCAACCCCAGATTTCACTCCCTCGGTTAGTAACAAGCTTCCAACCGATAACAAGAAAAATACTCATGTGATAATCGGAGTACCTATAGGGATTGGAGTTTTAAGCGTTATTCTTTCTATTTTTGTGGCTTGTTTCATTATTCGAGGAAGACAACATCATGCTAAGAAAAATGAAGAGTTGTTATGTATAGAAGCTAGACCATACACTTTCAGTTACTCTGAGTTGAAGAATGCCACAAATGACTTTGATTCTACTAATAAGATTGGAGAAGGTGGATTTGGACCTGTTTATAAGGGAACACTTACTGATGGAAGGGTTGTGGCTATTAAGCAACTATCTAAATGTTCTCGCCAAGGAAACTCAGAGTTCATAACTGAGATTGCTACTATTTCAGCAGTGCAACATCGTAACCTCATTAAGTTACATGGATGTTGTATTGAGAATGATGAACGACTTCTTGTTTATGAGTATTTAGAAAATGGAAGTCTTAATCAACTATTATTTGGAAAAATAAGTTCACTTCTAAATTGGCCAACACGATTTGGTATTTGTAAGGGAATTGCACAAGGCCTAGCTTATCTCCATGAAGAATCAGAACTACGTATAATACATCGTGATGTGAAGACTAGTAATATTCTTCTAAACCATCAATTTGTCCCAAAGATATCAGATTTTGGTTTAGCTAAGTTATTTGATCAGGAAAAAACCCACTTAAGTACTAAGCTTGCTGGGACAATGGGATATTTGGCACCAGAATATGCTTGGCGTGGACACCTCACAGAGAAAGCAGATGTATTTTCTTTTGGTATTGTAGCTCTAGAGATTGTCAGTGGAAAGTCAAATCTGAATTCTATCTTTGACAACGAAGAAAAAAAGATGTTTCTTCTAGAATGGGCTTGGAACCTCTACATAAACAATAATGAAATTGAAATGGTGGATTCTAGATTGCAAGAGTTTGATGAAATAGAAGTGAAACGTGTTGTTGGAATTTCTTTATTGTGCATACAAGCCTCACCTTTTATACGACCATCCATGTCCCGCATAGTAGCAATGCTTTCAGGTGATGTTGAAGTGACTCGTCTAACAATGATGCCTGAGTACTTGACTTATGTAAACTTTGATGAGGGAACTAACTCGATGAATACAATAAATGGATCATATGTGAGTCACCACACTTCAACAAACACTAGCATTAAGGAAGCTGTGAATTATTAA 1960 0.3719 DLSYNNLSGSLPSWVTEQNLQINLVGNNFQAKDIENSVIPSGLRCLQRNFPCNRGTGVYYNFSINCGGPEILYSNGVVYESDNEKLGPATYFVTKTQRWAVSNVGYFTGSSGLSMYTSYVPNKFVGTLDSNMFQTARLSASSLRYYGLGLENGNYNVTLQFAESKILDSSSWKSTGRRIFDVYIQGNLVLKDFDIQKEAGKVSFKAVPMEFKAQVVENYLEIHLFWAGKGTCCIPDEYTYGPLISAISATPDFTPSVSNKLPTDNKKNTHVIIGVPIGIGVLSVILSIFVACFIIRGRQHHAKKNEELLCIEARPYTFSYSELKNATNDFDSTNKIGEGGFGPVYKGTLTDGRVVAIKQLSKCSRQGNSEFITEIATISAVQHRNLIKLHGCCIENDERLLVYEYLENGSLNQLLFGKISSLLNWPTRFGICKGIAQGLAYLHEESELRIIHRDVKTSNILLNHQFVPKISDFGLAKLFDQEKTHLSTKLAGTMGYLAPEYAWRGHLTEKADVFSFGIVALEIVSGKSNLNSIFDNEEKKMFLLEWAWNLYINNNEIEMVDSRLQEFDEIEVKRVVGISLLCIQASPFIRPSMSRIVAMLSGDVEVTRLTMMPEYLTYVNFDEGTNSMNTINGSYVSHHTSTNTSIKEAVNY 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01472 652 ProSiteProfiles Protein kinase domain profile. 330 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01472 652 Pfam Malectin domain 61 247 IPR021720 -
Cca04g01472 652 CDD STKc_IRAK 336 600 - -
Cca04g01472 652 Gene3D - 60 251 - -
Cca04g01472 652 SUPERFAMILY Protein kinase-like (PK-like) 310 600 IPR011009 -
Cca04g01472 652 Pfam Protein kinase domain 332 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01472 652 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 647 - -
Cca04g01472 652 Gene3D Transferase(Phosphotransferase) domain 1 406 614 - -
Cca04g01472 652 SMART serkin_6 330 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01472 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Cca04g01472 652 Gene3D Phosphorylase Kinase; domain 1 292 405 - -
Cca04g01472 652 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01472 Cca-Chr4 20521199 20544386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01472 1 627 Receptor kinase-like Gene Family AT1G56120 59.809 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01472 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01472 - - tcc:108662925 848.195