Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01470 ATGTACAAGTTCGTTTTTCTGCTTTGCTTTTTCAACATGCATATGCTTATACTTGTTAACACTGCAGCTAATGAGAGTTCTGATGCTAAGGGCATAATAGGAGCTATTATAGATAGCAGTTCTCGCATAGGCCAAGAGCATGCAGTGGCTATGAATCTGGCATTGGAAGACTTTAATCACAAAAACAATCTGACTTTTGATCTGCATATAAGAAACTCTCAAGGAGATCCTCTTTTGGCAGCTATTGCAGCTAGAGATCTGATTGATAATCAAAAGGTACAAGCCATCATTGGACCACAAACATGGCAAGAGACATCTTTAGTGGCTGAAATCTGTAGCAAAAAAAGCATACCCCTCCTTTCTCTAGCAGATACTCCTGAATGGGCAATGAAGAAGTGGCGCATTCTGCTGCAATCCTCACCTAGCCAAATTATGCAGATGAAAGCTATAGCTGAAATTGTAAAATACTGGAAACTCTATAATGTTAGCATGATATATGAAGATGGAGACTCATCATCCACTGAAGTTTTATCTAAGCTCTCTGAAGCTCTTACAGAAGTTGACACAAAATTAAACAATGTTGTAGCAATCCCACCTCTAGTTTCTTTTTCTATGTCCCAGCAACTTGAGAAGCTAAGAGAAGGACAATGTAGAGTCTTTATAGTCCATTTGTCTTTTCCTTTGACACTAAAACTGTTTGAAACTGCAAAAAGAATGAATATGATGGGGGAAGGTAATGTATGGATTACTACTAGCACATTTACAAGCCTTGTTCATTCCTTGAATGCATCCACCATCTCCAATATGCAAGGGATTATTGGAGTAAAGAGTTATATCCCAAATCTATGGCACCAGTATGGGAACTTCTACCATAAATTTCGGAAAAAATTTAGCTCAGAGAATTTTGAAGAGTTTAGTTATGAGCCTGGGATCTTTGCAGCCCAGGCTTATGATGCTACATGGAATGTGGTTGATGCAATGAGGGAAACCAACCAAAAAGGGGGTCAATTTTTGCTAGATAAGATTTTGCTTAGTAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGAACATAAAATAGCACCAACACATACTTTTCAAATTATTAATGTGATTGGGAGGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGACTTGGTTTCTCAAAATCTTTAGATCAAAATGCTTCTTACAGCCCTTCAGTGGAGGAATTAGGAAAAGTAGTTAATCCAACATGTTCCTTAAGACTAAGAATTGGTGTCCCCTCCACATCAACATTCAAACAGTATGTTGATGTTATTCAAGATCATTCTGAAAATGTTACTTCCTTCAAGTTCAAGGGATTTTCCATAGATCTTTTCGAGGAAACAGTAAAAAAATTGCCATACCATCTGGAATATGATTATTTTTCCTATAATGACACATATGATAAATTGGTGAAGCAAGTTTATTTAAAGAAATATGATTTAGTTGTTGGAGATGTAGCAATAGTATCCACGCGTTATGAATATGTTTCATTCACTCAGTCCTATACAGATCCCGGAGTGGTGATGATTGTTCCTGTTAAATCAAAGACAGGCAATAGAGCATGGTTATTCTTGAAGCCTTTCACAAAAGTCATGTGGATTCTCATATTGGTCATCATTGTCTACAATGGCTTTGTTGTATGGCTGATTGAAAGAAACCACCGCCCTGAACTGAAGGGCCCTATTCTGCATCAAACAACAACTATGTTGTGGTTGGCTTTCTATTCTCTGTTCTCATTGAATGGGGACAAGTTACATAGCAATTTATCAAGGGTGGCAACGGTGGTGTGGCTTTTTGTGGCTCTAATAATTACACAGATTTACACTGCTAACCTTGCCAGCATGTTGACTGTTGAAAGATTTGAACCAACCATAGACAGCATTCAGCAGCTAAAGAACAACAATGCCATGGTAGGATATGATAGAGGATCCTACTTAAAAAGATATCTCCAAGATGTATTGGGCATCAATGCTGAAAACATCAAGCAATTTGACTCACAAGAGAGCTATGCTGATGCCCTAAGAAACAAAGAAATAGCAGCTGCCTTCCTTGATATCCCTGAGGCCAAAATCTTCCTTGCAAAGAACTGTAAAGGGTTTGTTCAAGCAGGGCCAACATACAAAATTGGAGGATATGGATTTGTATTTCCAAAGGGATCTCCATTGCTTCATGGTGTAAACCAAGCCCTACTAGACATATCAGAAATTGGCACACTACGTAATCTAGAAAACAATATGCTTGCATCAGAGGAATGTAAAGACATAATTGAGCCAGGTGAAGACACAACTAGCCTTAGCCCTACAAGCTTCATGGTTCTCTTCATCCTAACTGGAGGCACTTCAACAACTGCTCTCTTAATTTACATATTTCCTATGAATTATTTATGCCCTGGACAGAGAGCAACGTGGAGTCTAATGATGGCTGTGATCAAAAGTTGGAGATTCCAAAAGGCACTGTTTCCAAGAAGAGTCCACAATGTTGCAGAAAGTTCTTCCAACATTTCTAATTTGCCAGATTTAGCTTAA 2556 0.383 MYKFVFLLCFFNMHMLILVNTAANESSDAKGIIGAIIDSSSRIGQEHAVAMNLALEDFNHKNNLTFDLHIRNSQGDPLLAAIAARDLIDNQKVQAIIGPQTWQETSLVAEICSKKSIPLLSLADTPEWAMKKWRILLQSSPSQIMQMKAIAEIVKYWKLYNVSMIYEDGDSSSTEVLSKLSEALTEVDTKLNNVVAIPPLVSFSMSQQLEKLREGQCRVFIVHLSFPLTLKLFETAKRMNMMGEGNVWITTSTFTSLVHSLNASTISNMQGIIGVKSYIPNLWHQYGNFYHKFRKKFSSENFEEFSYEPGIFAAQAYDATWNVVDAMRETNQKGGQFLLDKILLSNFTGLSGKIQFTEHKIAPTHTFQIINVIGRSYREIGFWSDGLGFSKSLDQNASYSPSVEELGKVVNPTCSLRLRIGVPSTSTFKQYVDVIQDHSENVTSFKFKGFSIDLFEETVKKLPYHLEYDYFSYNDTYDKLVKQVYLKKYDLVVGDVAIVSTRYEYVSFTQSYTDPGVVMIVPVKSKTGNRAWLFLKPFTKVMWILILVIIVYNGFVVWLIERNHRPELKGPILHQTTTMLWLAFYSLFSLNGDKLHSNLSRVATVVWLFVALIITQIYTANLASMLTVERFEPTIDSIQQLKNNNAMVGYDRGSYLKRYLQDVLGINAENIKQFDSQESYADALRNKEIAAAFLDIPEAKIFLAKNCKGFVQAGPTYKIGGYGFVFPKGSPLLHGVNQALLDISEIGTLRNLENNMLASEECKDIIEPGEDTTSLSPTSFMVLFILTGGTSTTALLIYIFPMNYLCPGQRATWSLMMAVIKSWRFQKALFPRRVHNVAESSSNISNLPDLA 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01470 851 Pfam Bacterial extracellular solute-binding proteins, family 3 446 754 IPR001638 -
Cca04g01470 851 PANTHER GLUTAMATE RECEPTOR 23 843 - -
Cca04g01470 851 SMART GluR_14 417 759 IPR001320 GO:0015276|GO:0016020
Cca04g01470 851 SUPERFAMILY Periplasmic binding protein-like I 31 385 IPR028082 -
Cca04g01470 851 Gene3D - 530 656 - -
Cca04g01470 851 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 843 - -
Cca04g01470 851 CDD PBP1_GABAb_receptor_plant 33 393 IPR044440 -
Cca04g01470 851 Gene3D - 415 529 - -
Cca04g01470 851 PIRSF IGluLR_plant 1 814 IPR017103 -
Cca04g01470 851 Pfam Receptor family ligand binding region 49 373 IPR001828 -
Cca04g01470 851 Gene3D - 34 364 - -
Cca04g01470 851 Gene3D - 142 384 - -
Cca04g01470 851 CDD GluR_Plant 417 757 - -
Cca04g01470 851 Pfam Ligand-gated ion channel 755 789 IPR001320 GO:0015276|GO:0016020
Cca04g01470 851 SUPERFAMILY Periplasmic binding protein-like II 418 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01470 Cca-Chr4 20447312 20461892 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01470 1 799 Ion Channels AT2G29120 31.797 9.98e-125 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01470 - - gmx:100818623 1395.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01470 04 20447312 20461892 Cca04g01470 04 20447312 20461892 ECH