Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01467 ATGATTGTTCCTGTTAAATCAAAGACAGGCAATAGAGCATGGCTATTCTTGAAGCCTTTCACAAAAGTCATATGGATTCTCATATTGGTCATCATTTTCTACAATGGCTTTGTTGTATGGCTGATTGAAAGAAACCACCGCCCTGAACTTAAGGGCCCTATTATGCATCAAGTTGTGGTTGGCTTTCTGTTCTCTGTTCTCATTGAATGCCTTGCCAGCATGTTGACTGTTGAAAGATTTGAACCAACCGTACACAGCATTCAGCAGCTAAAGAACAATAATGCCATGGTAGGATATGATAGAGATCTCAGAGTGGTGATGATTGTTCCTGTTAAATCAAAGACAGGCAATAGAGCATGGCTATTCTTGAAGCCTTTCACAAAAGTCATATGGATTCTCATATTGGTCATCATTTTCTACAATGGCTTTGTTGTATGGCTGATTGAAAGAAACCACCGCCCTGAACTTAAGGGCCCTATTATGCATCAAGTTGTGGTTGGCTTTCTGTTCTCTGTTCTCATTGAATGCAATTATGATAATTGGTGTATACAGATGAAGACCTTGTTGGGTTCCCAAAGTCTGTGGGACATAGTGGAGAAGGGGTTCCAAGAACCCAAGGAGGACGAAGAGCAATCTGTGGCTCAGATTGCCGCATTGGAAAAGACACGAGTGAAGGACAAATCGGCTTTGTATTTTTTGTACAACGCCGTGGATGAGTCAGGTTTCGAGAAGATTGCAAGCGCTACATCTTCAAAGGAAGCATGGAAGATCTTGGAGGTTGTTCTAACCTA 791 0.4172 MIVPVKSKTGNRAWLFLKPFTKVIWILILVIIFYNGFVVWLIERNHRPELKGPIMHQVVVGFLFSVLIECLASMLTVERFEPTVHSIQQLKNNNAMVGYDRDLRVVMIVPVKSKTGNRAWLFLKPFTKVIWILILVIIFYNGFVVWLIERNHRPELKGPIMHQVVVGFLFSVLIECNYDNWCIQMKTLLGSQSLWDIVEKGFQEPKEDEEQSVAQIAALEKTRVKDKSALYFLYNAVDESGFEKIASATSSKEAWKILEVVLT 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01467 263 Pfam Domain of unknown function (DUF4219) 177 199 IPR025314 -
Cca04g01467 263 PANTHER GLUTAMATE RECEPTOR 1 60 - -
Cca04g01467 263 Gene3D - 8 59 - -
Cca04g01467 263 Gene3D - 114 252 - -
Cca04g01467 263 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 71 101 - -
Cca04g01467 263 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 60 - -
Cca04g01467 263 PANTHER GLUTAMATE RECEPTOR 71 101 - -
Cca04g01467 263 PANTHER GLUTAMATE RECEPTOR 102 171 - -
Cca04g01467 263 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 102 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01467 Cca-Chr4 20408087 20411652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01467 1 99 Ion Channels AT2G29110 28.030 5.24e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01467 - - gmx:100776939 144.436