Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01466 ATGCACAAGTTAGTTTTCCTGCTTTGGTTTTTCAACATGCATGTAATCATACTTGGGAAAAGTGCAGCTAATGAGAGTTCTGATGTTAAGGGCATAATAGGAGTTATTATAGATAGCAGTTCTCGCATAGGCCAAGAGCATGCAGTGGCTATAAATCTGGCATTGGAAGACTTTTATCGAAAAAACAATCTGAGTTTTGCTCTGCATATAAGAAGCTCTCAAGGAGATCCTCTTTTGGCAGTTATTGCAGCGAGGGATCTCATTGATAATCAAAAGGTGCAAGCAATCATTGGACCACAAACATGGGCTGAGACATCTTTAGTGGCTGAAGTCTGTAGCCAAAAGAGCATACCCCTCCTTTCTCTAGCAGATACAACTCCAGAATGGGCAATGCGGAAGTGGCACTTCCTGCTTCAATCCTCACCTAGCCAAATTATGCAGATGAAAGCTATAGCTGAGATTGTGAAGTCTTGGGAACTCTATAATGTTAGCATGATATATGAAGATGGAGACTCATCATTTACTGAAGTTTTATCTCAGCTCTCTGGAGCTCTTACAAAAGTTGGCACAAAATTAAACAATGTTCTAGCAATTGCACCTCTAGTTTCTTCTTCTCTGTCCCAACAACTAGAGAAGCTAAGAGAAGGACAGTGTAGAGTCTTCATTGTCCATTTGTCTTTTCCTTTGACCCTACACCTGTTTGAAACTGCAAAAAAAATGAAAATGATGGGGGAAAGTAATGTATGGATTACCACTAGTACCTTTACAAGCCTTGTTCATTCCTTGAATGCATCCTCTATCTCCAATCTACAAGGGATCATTGGAGTGAAGAGCTATATGCCAAATCTATGGTACCAACATGTAAACTTCTACCATAGATTTCAGGTAAAATTTTGCTCAGAGAATTTTGAAGAGTTTAATTGTGAGCCTGGGATCTTCGCAGCCCAGGCTTATGATGCAGCATGGATTGTGGTTCAGGCAATGAGAGAAACCAAGCAAGGACAGGGTCAAGTATTGCTAGATAAGATTTTACTAAGTAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGACCATAAATTACCTCCAGCACATACTTATCAAATCATTTATGTGATTGGAAGGAGCTACAAGGAAATTGGGTTCTGGTCAGATGGGCATGGTTTCTCAAAATCTTTGGATCAAAATGCTTTTTACAATTCTTCGGTAAAGGAATTAGGAAAAGTAGTTAATCCAACTTGTGTCATACGACTAAGAATTGCTGTCCCCTCCACACCAAACTACAAACAGTATGTCAATGTTATTGAAGATGAAAATGTTACATCCTTCAAGGGATTTTCCATAGAGCTTTTCAACGAAACAGTAAAAAGATTACCATACCTAGAATATGATTATTTTGCCTTTAATGGCACATATGATGACCTGGTGAAGCAAGTATATTGGAAGAAATATGATGCAGTTGTTGGTGATGTATCGATAGTGTCCGCTCGTTATGAATATGCTTCATTCACTCAGCCCTATACTGATACCGGACTGGTGATGATTGTTCCTGTTAAATCAAAGACAGGCAATAGAGCATGGCTATTCATGAAGCCTTTCACAAAGCTCATGTGGATTCTAATATTGGTCATCATTGTCTACAATGGCTTTGTTGTATGGTTGATTGAAAGAAACCACTGCCCTGAACTTAAGGGCCCTATTCTTCATCAAACCACAACTGTGCTGTGGTTGGCTTTCTGTTCTATGTTCTCTTTGAATGGGGGCAGGTTGCATAGCAATTTATCAAGGGTGGCAATGGTGGTCTGGCTTTTTGTGGCTCTAATCATTACACAGACTTACACTGCTAGCCTTGCCAGCATGTTGACTGTTGAACGGTTTGAACCAACAGTTGACAGCGTTCAACAGCTAAAGAAAAGCAATGCCACGGTAGGATATGATACAGGATCCTACTGTGAAAGATATCTCCAAGATGCATTGGGCATGAATGCAAAAAACATCAAGCCATTTGATTCACAGGAGAGCTATGCTGATGCCCTAAGAAACAAAGAAATAGCAGCTGTCTTCATTGATGTTCCTGGGTCCAAACTTTTCCTTGCAAAGCACTGTAAAGGGTTTGTTCAAGCAGGGCCTACATACAAGATTGGAGGATATGGATTTGTATTTCCAAAGGGATCTCCGTTGCTTCATAGTGTAAACAGAGCCATGCTGAACATATCTGAAAATGGCACCATTCGTGATCTAGAAAACAGTATGCTTGCATCAGAGGAATGTAAAGACATAATTGACACGTATGGAGAAACTACTAGTGTTAGCCCTGCAAGCTTCATGGTGCTCTTCATCCTAACTGGAGGCACTTCAACAATTGCTCTCTTAAGCTACATATTTTCAGTGAATTGTTTATGCTCTGAACAGAGAACAATATGGAGTCTAATGATGGCTGTGATGAAACGTTGGAGATCTCGAAAGAGACTGTTTTCAAGAAAAGTCTACAATGTTGCAGAAAGCCCTTTAAACTCGTCCAACATTTTCAATTTGCCAGCTTTAGCTTAA 2553 0.398 MHKLVFLLWFFNMHVIILGKSAANESSDVKGIIGVIIDSSSRIGQEHAVAINLALEDFYRKNNLSFALHIRSSQGDPLLAVIAARDLIDNQKVQAIIGPQTWAETSLVAEVCSQKSIPLLSLADTTPEWAMRKWHFLLQSSPSQIMQMKAIAEIVKSWELYNVSMIYEDGDSSFTEVLSQLSGALTKVGTKLNNVLAIAPLVSSSLSQQLEKLREGQCRVFIVHLSFPLTLHLFETAKKMKMMGESNVWITTSTFTSLVHSLNASSISNLQGIIGVKSYMPNLWYQHVNFYHRFQVKFCSENFEEFNCEPGIFAAQAYDAAWIVVQAMRETKQGQGQVLLDKILLSNFTGLSGKIQFTDHKLPPAHTYQIIYVIGRSYKEIGFWSDGHGFSKSLDQNAFYNSSVKELGKVVNPTCVIRLRIAVPSTPNYKQYVNVIEDENVTSFKGFSIELFNETVKRLPYLEYDYFAFNGTYDDLVKQVYWKKYDAVVGDVSIVSARYEYASFTQPYTDTGLVMIVPVKSKTGNRAWLFMKPFTKLMWILILVIIVYNGFVVWLIERNHCPELKGPILHQTTTVLWLAFCSMFSLNGGRLHSNLSRVAMVVWLFVALIITQTYTASLASMLTVERFEPTVDSVQQLKKSNATVGYDTGSYCERYLQDALGMNAKNIKPFDSQESYADALRNKEIAAVFIDVPGSKLFLAKHCKGFVQAGPTYKIGGYGFVFPKGSPLLHSVNRAMLNISENGTIRDLENSMLASEECKDIIDTYGETTSVSPASFMVLFILTGGTSTIALLSYIFSVNCLCSEQRTIWSLMMAVMKRWRSRKRLFSRKVYNVAESPLNSSNIFNLPALA 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01466 850 Gene3D - 38 365 - -
Cca04g01466 850 CDD PBP1_GABAb_receptor_plant 33 394 IPR044440 -
Cca04g01466 850 Pfam Ligand-gated ion channel 751 785 IPR001320 GO:0015276|GO:0016020
Cca04g01466 850 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 840 - -
Cca04g01466 850 Gene3D - 143 386 - -
Cca04g01466 850 Pfam Receptor family ligand binding region 49 371 IPR001828 -
Cca04g01466 850 SMART GluR_14 418 755 IPR001320 GO:0015276|GO:0016020
Cca04g01466 850 PANTHER GLUTAMATE RECEPTOR 23 840 - -
Cca04g01466 850 Pfam Bacterial extracellular solute-binding proteins, family 3 442 750 IPR001638 -
Cca04g01466 850 Gene3D - 418 526 - -
Cca04g01466 850 Gene3D - 700 760 - -
Cca04g01466 850 SUPERFAMILY Periplasmic binding protein-like I 32 389 IPR028082 -
Cca04g01466 850 PIRSF IGluLR_plant 1 843 IPR017103 -
Cca04g01466 850 SUPERFAMILY Periplasmic binding protein-like II 419 750 - -
Cca04g01466 850 CDD GluR_Plant 418 753 - -
Cca04g01466 850 Gene3D - 527 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01466 Cca-Chr4 20333470 20338684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01466 4 810 Ion Channels AT2G29120 31.083 4.07e-121 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01466 - - gmx:100818623 1384.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01466 04 20333470 20338684 Cca04g01466 04 20333470 20338684 ECH