Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01462 ATGGATCAGATGAGTCAACAAGGGCAGGGCTATTTCCATTCTGAAAGTATCAATTTTAGAGGCGCCAATGTTTCTCGGCCTAATATCTGCACGGTGGTGACGGCTTCAGGGAATGCAACTAATCCTGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGTTGTATGGCATGACACAATACACTGGAATTCAGCATCAACCTGATCTTCATATGGGTGTTCCAGCTTCTGCCAACTTGTACTATTCTGGCATGAATCCTTCAACTAGTACTGCCGTGTCTCAAAATCATGGAGCCTCTGGCCAGTTGTCAGGTTCAAGCACATTTGCGGTCAATGGAGCATACAAATGGAAAAATGATGAAGGGATGAGAGGAAACTATCAACATTTCAATGCCTCGGCTAGTTCTTCGGCTGCTCCACCTAATGCAAGACATGCCGAAAATGGCATCCCTTCGCTACCGCATTGTAGTTCGTGGAGCAGATCGGGGGAGTCTATGATGGTGCATAACCATAACCATTTGATTCAAGGAAACTATTTAGGCCAGCACTTTCAACCAGTTGCTTCTCCATGGACCGACCAACAATTGAATAGCAATACTAATGATGGTCGTGCTTTGGCTTGGCATCAGTCTCTTCCAATGCCCTATGTACAAGCTCCCAGTGCTAATGGAAGTTCATCAGAGAATGCAAGAATGGGTTTGCAGAGATATCATGATACAGCTGCCAGCAGAAGTGGCCTCAGATTTCCCCATCCTCCTCCTGCCAATGCACAGTACCATAACTTTCATCACCAAACACAGTCTGCGCAAGAGATTAGAGGTCACTCTGTCAACTTTCACCCTTCAGTAACTGCACCTTCATACAGAGTTCAAGCAAATCCTTCGCGTAGTTCTTCAATCCTTGTGCAAAACGCTTTGGAGATAGGTGCTAGGCATGCTGGCCCTGTGCCAGTTGCAGGTGCACGTATACACCGACCTCATAGAGGCAACATGCATGAGACAACTCTTAGACATCGGAATCTTCCTCCCGTGGCCTTTTTCCAAGTTGATGATGTTGCTTTACTAGTTGACCACCATAGAGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGTGAGAGGATTGGCAATGTAAACACGGGTTTGTCAGAGGAAATGATTACAATTCAAATGAAGACAAGAACTTATTTGCTACCTACTAATGCTATTAACTTGGAGGAGGCACCATCTGATGAACAAGAAACTGATTCTTGCACAATATGCCAGGATGAATATAAGAATCAAGAGAAGATTGGAATTCTTCAATGCGGGCACGAATATCATGAAGATTGTTTAAGGAAATGGTTACTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACACATGGAGAGAAGTGTGAATGA 1434 0.4393 MDQMSQQGQGYFHSESINFRGANVSRPNICTVVTASGNATNPDSHYLLDAYDNGMLYGMTQYTGIQHQPDLHMGVPASANLYYSGMNPSTSTAVSQNHGASGQLSGSSTFAVNGAYKWKNDEGMRGNYQHFNASASSSAAPPNARHAENGIPSLPHCSSWSRSGESMMVHNHNHLIQGNYLGQHFQPVASPWTDQQLNSNTNDGRALAWHQSLPMPYVQAPSANGSSSENARMGLQRYHDTAASRSGLRFPHPPPANAQYHNFHHQTQSAQEIRGHSVNFHPSVTAPSYRVQANPSRSSSILVQNALEIGARHAGPVPVAGARIHRPHRGNMHETTLRHRNLPPVAFFQVDDVALLVDHHRDMRLDIEDMSYEELLALGERIGNVNTGLSEEMITIQMKTRTYLLPTNAINLEEAPSDEQETDSCTICQDEYKNQEKIGILQCGHEYHEDCLRKWLLVKNVCPICKSEALTHGEKCE 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01462 477 SMART ring_2 425 465 IPR001841 -
Cca04g01462 477 Pfam Ring finger domain 423 466 IPR001841 -
Cca04g01462 477 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 113 474 IPR045191 GO:0061630
Cca04g01462 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 471 IPR013083 -
Cca04g01462 477 ProSiteProfiles Zinc finger RING-type profile. 425 466 IPR001841 -
Cca04g01462 477 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 113 474 - -
Cca04g01462 477 SUPERFAMILY RING/U-box 416 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01462 Cca-Chr4 20245866 20249807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01462 358 470 C3H Transcription Factor Family AT2G15530 51.724 7.51e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01462 K19041 - gmx:100779069 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01462 04 20245866 20249807 Cca04g01462 04 20245866 20249807 ECH