Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01461 ATGGGGGACTTGAAATTTTCCTTCAAGACCCAAGATCATGTCCACCAAAGAGCAAAACACAACAAAAAGAGGCTAACTGAAGACCAAGTTGCTATTCTTGAGAAGTGCTTTGCCTCCAACATGAAGCTTGAGCCTGAGCAAAAGTTCCACCTTGCAAACCAACTTGGTGTGCCTCCAAGGCAAGTTGCCATTTGGTACCAAAACAAAAGGGCTCGTTGGAAGACTCAGAACCTTGAGGTGGACCATGGCGTGCTTCAGGCCAAGCTAGAGAATGTGATGGCTGAGAAGAAGCAACTAGAGAGAGATGTGGAACGGCTCAAGGTAGAGCTGAAGAAAGCTCAAGAGATGCTGCTAATTGGCAATGCCAAAGGTGGAGACTACCATAGTAATACTAATAACAATGGTTCTTGTGAGTTTTCAACTTCTTTTGAAGAGGGTGGGAGCTCAGGGGTGCTTGATGATGGCACTCACCATCATCATGAGTGCTGGCAAAGTGGTGAGGTTATGCAGGCTGAGGAGCTTTATGCTTATTTCATGGGTGCAAATTTTGGGTCAGGCTTGTTGCATGAGAAAAGGGCATAG 582 0.4605 MGDLKFSFKTQDHVHQRAKHNKKRLTEDQVAILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQNLEVDHGVLQAKLENVMAEKKQLERDVERLKVELKKAQEMLLIGNAKGGDYHSNTNNNGSCEFSTSFEEGGSSGVLDDGTHHHHECWQSGEVMQAEELYAYFMGANFGSGLLHEKRA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01461 193 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 10 186 - -
Cca04g01461 193 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 186 IPR045224 GO:0003700
Cca04g01461 193 Pfam Homeodomain 21 74 IPR001356 GO:0003677
Cca04g01461 193 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Cca04g01461 193 Gene3D - 15 81 - -
Cca04g01461 193 CDD homeodomain 19 77 IPR001356 GO:0003677
Cca04g01461 193 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Cca04g01461 193 SUPERFAMILY Homeodomain-like 13 78 IPR009057 -
Cca04g01461 193 SMART HOX_1 18 80 IPR001356 GO:0003677
Cca04g01461 193 Coils Coil 82 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01461 Cca-Chr4 20232713 20233393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01461 17 186 Homeobox Transcription Factor Family AT5G53980 42.941 2.54e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca04g01461 Homeodomain 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01461 - - ccaj:109788811 368.237