Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01457 ATGGGTCGTCCACCCAGTAATGGAGGCCCCGCCTTTCGCTTCACTCAGCCTGAGGTAACAGAAATGGAAGCTATTCTTCAAGAACACAACAATGCAATGCCAGCACGTGATGTTCTTACTGCTCTTGCGGAGAAGTTCAGTGAATCGCCAGATCGTAAAGGCAAGATTACGGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCAATAAGAGCAAAATCAAGTAAGACTCCGGGGAAGTTAAATATTACACCTTTAGCTCGGGATGATTCAACCCCAGTAAGGAGTATGCCTCAACAACCAACAGCTGCTCCAATTCCTGCTGCTTCTGCTTCAGTTCCAACAGTAGTAAAAGCAGCTCCAGAAAGTTCAGTTATGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTACCTTTCTATCTCACAGATATTTGGAGACCAGTGATCCGGAAGTGCTGGTAAGATTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGATTAACATTCGAAAACATGTCAGGCCACGCTCTTTGCCATGTGAATCATCTGAATGTGTTGTAGTCATCCCTGGTGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCTCTTTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGCAGGCATGATGTACGAGGCTGTCGTTGTAGATTTTTGGTTCGCTACGATCATGATCAGTCAGAGGAAATTGTGCCACTTAGGAAGATTTGTCGCAGGCCCGAAACCGACTACCGGTTACAGCAACTTCATGCTCTGAATGAGGCAGCACATGTGGATCAGCAAAAGACTGGCATGGATCCTACAGCAAATGTTAATGCCATGAGGGTTACTACTGAAACAGTGCCAAAGCAGCTGATTGCAGCAAACATTCATATGGAGACCCCAGTTTTGCAAACAAATGTTCCTGAAAGTATGGATGTGGATCCAAAGAAAGCTGAAGCAATTACTGATGTTCAAGCAGGAAATTCCATCATCACCCCAGGCAGTACCCCATTTACTAACATCATCACTACAAGCAGTGTTCCTGAAGTTTCAAGTCAGACTCAGAACATGGTTGAATGA 1119 0.4468 MGRPPSNGGPAFRFTQPEVTEMEAILQEHNNAMPARDVLTALAEKFSESPDRKGKITVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPLARDDSTPVRSMPQQPTAAPIPAASASVPTVVKAAPESSVMEFEAKSGRDGAWYDVATFLSHRYLETSDPEVLVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLQQLHALNEAAHVDQQKTGMDPTANVNAMRVTTETVPKQLIAANIHMETPVLQTNVPESMDVDPKKAEAITDVQAGNSIITPGSTPFTNIITTSSVPEVSSQTQNMVE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01457 372 CDD homeodomain 13 75 IPR001356 GO:0003677
Cca04g01457 372 Gene3D - 127 188 - -
Cca04g01457 372 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Cca04g01457 372 MobiDBLite consensus disorder prediction 83 113 - -
Cca04g01457 372 SMART HOX_1 7 81 IPR001356 GO:0003677
Cca04g01457 372 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 341 - -
Cca04g01457 372 Gene3D - 189 261 - -
Cca04g01457 372 Gene3D - 10 84 - -
Cca04g01457 372 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 341 IPR039276 -
Cca04g01457 372 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cca04g01457 372 Pfam SAWADEE domain 130 256 IPR032001 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01457 Cca-Chr4 20197473 20209436 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Cca04g01457 SAWADEE 6.2e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01457 - - gmx:100783895 645.195