Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01453 ATGGATAGCTTCTACcaccaccatcatcatcatcaccatcatcaacctcactttgacaacaacaacaacaacaacaaccacaacgagccacACTTACCTCCTGGCTTTCGGTTCCACCCCACAGATGAGGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGACAGCTCCTTCACTGGCCGAGCCATAGTCGAAGTCGACCTCAACAAGTGCGAGCCATGGGAACTTCCTGAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTTTAGCCTTCGTGATCGAAAGTACCCAACTGGGTTACGCACCAATAGGGCCACTGAAGCTGGTTACTGGAAAGCCACAGGGAAAGACAGAGAGATCTATAGCTCAAAAACTTGTTCCCTCGTTGGCATGAAGAAAACCTTGGTTTTCTATCGTGGAAGGGCTCCAAAGGGTGAAAAAAGTAACTGGGTCATGCATGAGTATCGCTTAGAAGGCAAATTCGCTTACCACTACCTCTCTAGAAGCTCCAAGGACGAGTGGGTGATATCACGTGTGTTTCAAAAGAACACCACGGGCGGTGGCTCCACCGTGTCGGCCACCGCCACCGGCGGTTCGAAGAAAACGAGAATGAGTGCATCAAACGTTAGTAGCAACATTGAACCGGGTTCACCCTCTTCCATTTACCTTCCGCCGCTTCTAGAATCTTCTCCATACACCGCCGCCAGCAGCACCACCGCCGCCGCCACATTCAACGACCGAGAAAGCTGCTCCTTCGACAGCGCCGCCACCAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCACCAACCCCTCCGCCTTCGACCACCTCGCTCCCCCGCCGGAGCCGCCCCTCGACCCGTTCTCCCGCTTCCACCGCAACGCCGTCGCCGTCTCCGCCGTCCCGAGCCTCAGGTCGCTGCACGACAATCTCCAGCTCCCCTTCTTTTTCCCTCCGGTGGGCCACGGCGGCTCCGCCGACGTGGCCCCCTTCGCCGCCCCGGGGAGCTGGACGGCGCCGGAGGATCAAAGGGTGGCCGAAGGTGGCGGCTCCGGCATGCCGATTGTGGCCTCGGAGCTTGATTGCATGTGGGGGTATTAA 1107 0.5303 MDSFYHHHHHHHHHQPHFDNNNNNNNHNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKNTTGGGSTVSATATGGSKKTRMSASNVSSNIEPGSPSSIYLPPLLESSPYTAASSTTAAATFNDRESCSFDSAATNQREHVSCFSTTNPSAFDHLAPPPEPPLDPFSRFHRNAVAVSAVPSLRSLHDNLQLPFFFPPVGHGGSADVAPFAAPGSWTAPEDQRVAEGGGSGMPIVASELDCMWGY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01453 368 Pfam No apical meristem (NAM) protein 33 159 IPR003441 GO:0003677|GO:0006355
Cca04g01453 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 365 - -
Cca04g01453 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 26 365 - -
Cca04g01453 368 SUPERFAMILY NAC domain 25 184 IPR036093 GO:0003677|GO:0006355
Cca04g01453 368 Gene3D NAC domain 41 188 IPR036093 GO:0003677|GO:0006355
Cca04g01453 368 ProSiteProfiles NAC domain profile. 32 184 IPR003441 GO:0003677|GO:0006355
Cca04g01453 368 MobiDBLite consensus disorder prediction 1 16 - -
Cca04g01453 368 MobiDBLite consensus disorder prediction 188 214 - -
Cca04g01453 368 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01453 Cca-Chr4 19963386 19965762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01453 1 368 NAC Transcription Factor Family AT5G53950 49.878 1.22e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca04g01453 NAM 5.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01453 - - gmx:100788671 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01453 04 19963386 19965762 Cca04g01453 04 19963386 19965762 ECH