Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01450 ATGGCTCCCAGGGATAACAACACCAGCAGATCCGCCGCCGCCATTGGGCCCGGGCCTGGGCCCGCCCCGGCCCATTTGCCCAAAGAGATCCGCTACAGAGGCGTCAGGAAGCGCCCCTGGGGACGCTACGCCGCCGAGATCCGCGACCCGGGAAAGAAAACGCGCGTCTGGCTCGGCACGTTCGACACCGCCGAGGAGGCCGCGCGTGCCTACGACGCCGCGGCGCGTGAGTTTCGCGGCGCCAAGGCCAAGACGAATTTCCCCACGCGCGCGGAAATGACGGCCCACGCCGCGCGCAGTCCCAGCCAGAGCAGCACGCTCGACGACTCCGACTCGTCCTCCGTGGTGGACTACGAGCGGGTCCCACATCGGAGAGTTTTGGATCTCGACCTTAACGTGCCCCCTCCGCCCGAGGTTGCTTGA 423 0.6809 MAPRDNNTSRSAAAIGPGPGPAPAHLPKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTRAEMTAHAARSPSQSSTLDDSDSSSVVDYERVPHRRVLDLDLNVPPPPEVA 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01450 140 Gene3D AP2/ERF domain 30 91 IPR036955 GO:0003700|GO:0006355
Cca04g01450 140 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Cca04g01450 140 MobiDBLite consensus disorder prediction 1 30 - -
Cca04g01450 140 MobiDBLite consensus disorder prediction 85 119 - -
Cca04g01450 140 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Cca04g01450 140 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Cca04g01450 140 PANTHER ERF FAMILY PROTEIN 1 106 - -
Cca04g01450 140 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Cca04g01450 140 MobiDBLite consensus disorder prediction 96 112 - -
Cca04g01450 140 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Cca04g01450 140 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Cca04g01450 140 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 106 - -
Cca04g01450 140 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01450 Cca-Chr4 19900291 19901362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01450 28 116 AP2-EREBP Transcription Factor Family AT3G15210 77.660 8.05e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca04g01450 AP2 8.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01450 K09286 - gmx:100786709 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01153 04 13245131 13246170 Cca04g01450 04 19900291 19901362 ECH
Cca04g01450 04 19900291 19901362 Cca08g02442 08 58550262 58551902 ECH
Cca04g01450 04 19900291 19901362 Cca04g01450 04 19900291 19901362 ECH