Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01443 ATGGAGGCCAAGAGTGTGGAGAAGAAGAGAGCCTTGGTTGAGAAGGTGAGAAAGAATAGCACagtggaagaggaagtggagaatgaagtagaagaggaggatgaaagtggTGTTAGTCTCACAGAAGAAGAGAAGAAAAAAGGGGTTAGTAGTAGTAGTGTTAGTGGGAGAAGAGGGTCAAGTGGGGGTGGTGGAGGGGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGTGCTGATTTGAGTGATGCAAAGAGGTACCATCGCCGCCACAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGCTAAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTTGGGGAGTTTGATGAAGCTAAGAGAAGCTGCCGCCGGCGGCTTGCCGGACACAACGAGCGGCGCCGGAAAAGCAATCCTGAAGTTGGCAATGAGGGCAGCAAAGGTCAGCACCACCCTAAGGACACAACACACTGCAGGCTAGTTGATGAGAGGGGGAGAATTCAGATGAACCTACCAGGGAGTTCTGGCTACAAGTCTTTCAACATCAGATGA 579 0.4715 MEAKSVEKKRALVEKVRKNSTVEEEVENEVEEEDESGVSLTEEEKKKGVSSSSVSGRRGSSGGGGGVSPPSCQAERCGADLSDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLGEFDEAKRSCRRRLAGHNERRRKSNPEVGNEGSKGQHHPKDTTHCRLVDERGRIQMNLPGSSGYKSFNIR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01443 192 MobiDBLite consensus disorder prediction 1 24 - -
Cca04g01443 192 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 192 IPR044817 GO:0003677
Cca04g01443 192 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 192 - -
Cca04g01443 192 Pfam SBP domain 72 145 IPR004333 GO:0003677
Cca04g01443 192 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Cca04g01443 192 SUPERFAMILY SBT domain 70 150 IPR036893 GO:0003677|GO:0005634
Cca04g01443 192 MobiDBLite consensus disorder prediction 142 173 - -
Cca04g01443 192 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Cca04g01443 192 MobiDBLite consensus disorder prediction 1 75 - -
Cca04g01443 192 MobiDBLite consensus disorder prediction 136 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01443 Cca-Chr4 19639547 19641327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01443 49 149 SBP-box Gene Family AT1G53160 68.317 3.37e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca04g01443 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01443 - - gmx:100800646 295.819