Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01440 aTGGTGGGCTCAGGAACATCAACAGATAGGAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGACCAAGAGTGAGAGGTGGCAATGGGTGCAAAGTTGGGGATGATAACGGCAGCTTgatgttgatgtGGGAAGATGGGTTTTGCCGCGGGAGAGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGGAAATCTTTTAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGGTTGATGGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTCAAAGAGCCAACAGAATGTGAGCCTAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTCTTCCTCCTGAATGGATAGATCAGTTTGAGTCAGGCATTCAGACCATCGCTGTAATTCAAGCTGGGCATGGCCTTCTGCAACTAGGTTCTTGCAAGATTATTCCTGAAGACCTCCATTTTGTGCTAAGAATGAGACACACATTTGAATCCCTAGGCTACCAATCAGGGTTCTACCTCTCCCAACTCTTCTCATCAACTAGAAGCACTTCCACTTCCACTTCCCTTCCTTCAAAGCCATGCACCATTCCAATTAGGCCACCCCCTCCACTCCTCAACTGGGGTCAGAGGCCACTTGGTACTTCTACCTCTTTGCTACCCTCTCCCACCTTTCAACATGCATCATCTAGAATGGGGTTCCCACAGGCCAAAGATGAGACACACATGTTCCTCATGCCTCATGCAACATCATCTGAGCATGCAAGATTGGGGGGAGACATCATGGGGGAGCAGCATCATGAGAATGACATAAAGTGGCCAAATGGCTTATCCATCTTCAATGCACTCACTGGAAGATCTGAGGATGCTAAACTCTTGTTCAACCAAGAGAGCCTGGGGAACAAACCAGGTGATCACAATCACCACCACTCTCTCAACACAAATCCCACTTCAGCATCAGTGCAAAGTGCTGGTGTGGCACTCCCAAATGAGTTCTTGAGCTTGGATGGCCACACTGAAGGGGCTAGGAAAGTGGACAAGTTCAAGAGGTGCTTCACTCTACCTGCTAGAGTGGCCTCATCTTCTTCTTCTACTTCAATGGATCACCATCAACAACAAGCAGGTGTGGAGTACAGGAATTCAGAAGGAGGCATGTACCAGGATGTCATGGAAACTTTTTTGGAGTGA 1263 0.4687 MVGSGTSTDRSKEAVGMMALHEALRSVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRVSDCLEEIDGEDPIRKSFSKMSIQLYNYGEGLMGKVTSDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWIDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRSTSTSTSLPSKPCTIPIRPPPPLLNWGQRPLGTSTSLLPSPTFQHASSRMGFPQAKDETHMFLMPHATSSEHARLGGDIMGEQHHENDIKWPNGLSIFNALTGRSEDAKLLFNQESLGNKPGDHNHHHSLNTNPTSASVQSAGVALPNEFLSLDGHTEGARKVDKFKRCFTLPARVASSSSSTSMDHHQQQAGVEYRNSEGGMYQDVMETFLE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01440 420 MobiDBLite consensus disorder prediction 322 347 - -
Cca04g01440 420 PANTHER GB|AAF34833.1 1 420 IPR044170 -
Cca04g01440 420 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 74 IPR025610 -
Cca04g01440 420 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 89 188 IPR025610 -
Cca04g01440 420 PANTHER GB|AAF34833.1 1 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01440 Cca-Chr4 19596180 19599833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01440 21 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 31.977 5.07e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01440 - - gmx:100789006 731.865