Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01439 ATGCATGTAATCATACTTGGGAAAAGTGCAGCTAATGAGAGTTCTGATGTTAAGGGCATAATAGGAGTTATTATAGATAGCAGTTCTCGCATAGGCCAAGAGCATGCAGTGGCTATAAATCTGGCATTGGAAGACTTTTATCAAAAAAACAATCTGAGTTTCGCTCTGCATATAAGAAGCTCTCAAGGAGATCCTCTTTTGGCAGTTATTGCAGCGAGGGATCTCATTAATAATCAAAAGGTGCAAGCAATCATTGGACCACAAACATGGGCTGAGACATCTTTAGTGGCTGAAGTCTGTAGCCAAAAGAGCATACCCCTCCTTTCTCTAGCAGATACAACTCCAGAATGGGCAATGCGGAAGTGGCACTTCCTGCTTCAATCCTCACCTAGCCAAATTATGCAGATGAAAGCTATAGCTGAGATTGTGAAGTCTTGGGAACTCTATAATGTTAGCATGATATATGAAGATGGAGACTCATCATTTACTGAAGTTTTATCTCAGCTCTCTGGAGCTCTTACAGAAGTTGGCACAAAATTAAACAATGTTCTAGCAATTGCACCTCTAGTTTCTTCTTCTCTGTTCCAACAACTTGAGAAGCTAAGAGAAGGACAGTGTAGAGTCTTCATTGTCCATTTGTCTTTTCCTTTGACCCAACACCTGTTTGAAACTGCAAAAAAAATGAAAATGATGGGGGAAGGTAATGTATGGATTACCACTAGTACCTTTACAAGCCTTGTTCATTCCTTGAATCCATCCTCTATCTCCAATCTAAAAGGGATCATTGGAGTGAAGAGCTATATGCCAAATCTATGGTACCAACATGTAAACATCTACCATAGATTTTGGAAAAAATTTTGCTCAGAGAATTTTGAAGAGTTTAATTGTGAGCCTGGGATCTTTGCAGCCCAGGCTTATGATGTTGCATGGATTGTGGTTCAGGCAATGAGAGAAACCAACCAAGGACAGGGTCAAGTATTACTAGATAAGATTTTACTAAGTAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGACCATAAAATACCTCCAGCACATACTTATCAAATCATTTATGTGATTGGAAGGAGCTACAAGGAAATTGGGTTCTGGTCATATGGGCTTGGTTTCTCAAAATCTTTGGATCAAAATGCTTTTTACAATTCTTCGAATGATCAATGCTTGATGCAGAAATATGATGCAGTTGTTGGTGATGTATCGATAGTGTCCGCACGTTATGAATATGCTTCATTCACTCAGCCCTATACTGATACAGGACTGGTGATGATTGTTCCTGTTAAATCAAAGACACGCAATAGAACATGGCTATTCCTGAAGCCTTTCACAATGCACATGTGGATTCTAATATTGGTCATCATTTTCTATAATGGCTTTGTTGTATGGTTGATTGAAAGAAACCACTGCCCTGAACTTAAGGGCCCTATTCTGCATCAAACCACAACGGTGCTGTGGTTGGCTTTCTGTTCTATGTTCTCTTTGAATGGGGGCAGGTTGCATAGCAATTTATCAAGGTTGGCAATGGTGGTCTGGCTTTTTGTGGCTCTAATCATTTCAGAGACTTACACTGCTAACCTTGCCAGCATGTTGACTGTTGAACAGTTTGAACCAACAGTTGACAGCCTTCAAAAGCTAAAGAAAAGCAATGCCACGGTAGGATGTGATACAGGATCCTACTGTGAAAGATATCTCCAAGATGCATTGGGCATGAATGCAAAAAACAACAAGCCATTTGATTCACAGGAGAGCTATGCTGATGCCCTAAAAAAGAAAGAAATAGCAGCTGTCTTCATTGATGTTCCTGGGTCCAAACTTTTCCTTGCAAAGCACTGTAAAGGGTTTGTTCAAGCAGGGCCTACATACAAGATTGGAGGATATGGATTTGTATTTCCAAAGGGATCTCCGTTGCTTCATAGTGTAAACAGAGCACTACTGGACATATCTGAAGATGGCACCATACGTAATCTAGAGAACACTATGCTTGCATCAGAGGAATGTAAAGACATAAGTCACACGGATGGAGAAACTACTAGTGTTAGCCCTGCAAGCTTCATGGTGCTCTTCATCCTAACTGGAGGCACTTCAACAATTGCTCTCTTAAGCTACATATTTTCAGTGAATTGTTTATGA 2151 0.4007 MHVIILGKSAANESSDVKGIIGVIIDSSSRIGQEHAVAINLALEDFYQKNNLSFALHIRSSQGDPLLAVIAARDLINNQKVQAIIGPQTWAETSLVAEVCSQKSIPLLSLADTTPEWAMRKWHFLLQSSPSQIMQMKAIAEIVKSWELYNVSMIYEDGDSSFTEVLSQLSGALTEVGTKLNNVLAIAPLVSSSLFQQLEKLREGQCRVFIVHLSFPLTQHLFETAKKMKMMGEGNVWITTSTFTSLVHSLNPSSISNLKGIIGVKSYMPNLWYQHVNIYHRFWKKFCSENFEEFNCEPGIFAAQAYDVAWIVVQAMRETNQGQGQVLLDKILLSNFTGLSGKIQFTDHKIPPAHTYQIIYVIGRSYKEIGFWSYGLGFSKSLDQNAFYNSSNDQCLMQKYDAVVGDVSIVSARYEYASFTQPYTDTGLVMIVPVKSKTRNRTWLFLKPFTMHMWILILVIIFYNGFVVWLIERNHCPELKGPILHQTTTVLWLAFCSMFSLNGGRLHSNLSRLAMVVWLFVALIISETYTANLASMLTVEQFEPTVDSLQKLKKSNATVGCDTGSYCERYLQDALGMNAKNNKPFDSQESYADALKKKEIAAVFIDVPGSKLFLAKHCKGFVQAGPTYKIGGYGFVFPKGSPLLHSVNRALLDISEDGTIRNLENTMLASEECKDISHTDGETTSVSPASFMVLFILTGGTSTIALLSYIFSVNCL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01439 716 PANTHER GLUTAMATE RECEPTOR 14 395 - -
Cca04g01439 716 CDD PBP1_GABAb_receptor_plant 21 382 IPR044440 -
Cca04g01439 716 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 14 395 - -
Cca04g01439 716 Gene3D - 442 582 - -
Cca04g01439 716 SUPERFAMILY Periplasmic binding protein-like II 396 665 - -
Cca04g01439 716 Pfam Bacterial extracellular solute-binding proteins, family 3 398 665 IPR001638 -
Cca04g01439 716 Gene3D - 388 441 - -
Cca04g01439 716 Gene3D - 615 675 - -
Cca04g01439 716 Gene3D - 26 353 - -
Cca04g01439 716 PANTHER GLUTAMATE RECEPTOR 395 714 - -
Cca04g01439 716 Pfam Receptor family ligand binding region 37 359 IPR001828 -
Cca04g01439 716 Pfam Ligand-gated ion channel 666 700 IPR001320 GO:0015276|GO:0016020
Cca04g01439 716 Gene3D - 131 373 - -
Cca04g01439 716 SUPERFAMILY Periplasmic binding protein-like I 21 378 IPR028082 -
Cca04g01439 716 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 395 714 - -
Cca04g01439 716 SMART GluR_14 359 670 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01439 Cca-Chr4 19555202 19560097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01439 400 713 Ion Channels AT2G17260 34.603 2.71e-58 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01439 - - gmx:100776939 1027.31