Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01438 ATGGTGCTGCAAAGATGTTACTCTATGGCTTTTGTTGTGCAATGGGGTTTCTTGGCTTGCTTTATTTGCTTTTCTGTGGGACTTGAAACCCCAGCCAGATCCTGTGACAAGCATGATCTATTGGCCCTGAAGGAATTTGCAGGCAACCTTACAAAAGGGTCTATCATCACAGCATGGTCAGATGATGTTGCATGCTGCAAATGGGTTGGAGTTGTTTGTAATGATGTGGTTGATGGAGCAGCTGTTAGTAGAGTTTCCAAGTTGATTTTACCTGGAATGGGTCTAAACGGCACGATTTCAAGCTCTTTAGCCCATCTAGATGAGCTAAAGGTGCTCAATCTTTCGTTCAATCGTCTCCAAGGTGGATTGCCTTCTGAATTATCTAATATGAAGCAGTTAAAAGTTCTTGACTTGAGCCATAATATGCTGTCTGGACCTGTTGGTGGGGCTCTTTCTCATTTGCAATCCATTCAAGTACTAAACATTTCTAGCAATTCATTTGTTGGAGACCTCTCCCATTTTGGGGGATTACAACATCTCCTTGCACTCAACATAAGCAACAATTCATTCACTGGCCAGTTCAATTCCCAAATTTGCAGCTCCTCCAAGGGTGTTCAGATTCTTGATATATCCAAAAACCATTTTGCTGGTGTTCTTGAATGGTTGGGCAACTGTAGCAGATCTCTCCAAGAGTTGCATTTGGATTCCAATTTATTTTCTGGCCCTCTCCCTGATTCTTTGTATGCAATGTCAGCCTTGGAGCAGCTCTCAGTCTCTGTGAACAACTTCTCTGGTCAGTTAAGCAAGGAGCTAAGTAACCTCTCAAACCTAAAATCTCTAATAGTTTTTGGAAATCGGTTTTCAGGGGAACTCCCGAATGTTTTTGGGAATCTTTTGGACCTTGAACAATTAATAGGACACTCCAATTCATTTTCTGGATCATTGCCTTCCACCTTGGCGTTATGCTCAAAACTTCGAGTGCTTGATCTTCGAAATAATTCTTTGACAGGTTCTGTTGGTCTCAATTTCACTGGATTGTCTAGTCTTTTCACCTTGGACCTTGGTAGCAATCATTTTAATGGATCCCTTCCAAACTCCCTGTCATATTGCCATGAATTGACAATGTTAAGCCTTGCTAAAAATGAATTAACTGGCTATATTCCAGAGAGCTATGCAAACCTCACTTCACTTTTGACTCTGTCTTTGTCGAACAATAGCTTTGAGAACTTATCTGGGGCACTTTATGTACTGCAGAAGAGCAAAAGTCTCACCACTGTTATCCTTACAAAAAATTTTCATGGCGAGGAAATTCCACATAGTTTAACAGCAGGCTTCAAGAGCCTTGTGGTTTTAGCACTTGGAAATTGTGGTCTAAAAGGTCACATTCCTGCTTGGCTATTGAATTGCACGAAATTGGAAGTTCTTGATTTGTCATGGAATCATTTGGAAGGTGGTGTCCCTTCTTGGATTGGTTCGATGGACAATTTATTCTACTTGGATTTGTCAAATAATTCTCTTACAGGAGAAATACCAAAAGGTTTGACAGAGATGAAGGGCCTCATATCCCCAAATTATCACATATCAAGTCTCTTTGCAGTTGCTGCTATTCCTCTTTATGTCAAGAGAAACAAGAGTGCTAATGGGCTGCAATATAACCATGCCTCAAGTTTCCCTCCTTCAATATACTTGAGTAATAACAGATTAAGTGGAAGAATATGGCCTGAAATTGGTCGTTTAAAAGAACTTCATATCTTAGATTTAAGCAGGAACAACATCACTGGCACCATTCCTAGCTCCATTTCAAAGATGAAGAATTTGGAAATATTAGATTTATCTAACAATAGTCTCATTGGATGTATTCCCCCATCATTTACCAACCTCACATTTTTGTCTAAGTTCAGTGTAGCGTATAACCACTTACAGGGACCAATTCCAAGTGGGGGACAATTTTCAAGTTTTCCAAATTCAAGTTTTGAGGGAAACCTGGGGCTTTGTGGGGAAACATATCGATCTTGTAACAGTGAAAACAATGTGGGCTTTGCTACCCATTCTGTGGGAAAATTGGGTAAAAGCAGTGTCCTTGGCTTAACAATTGGTTTAGGAGTAGGCCTTGCACTGCTTCTTGCAGTTATTCTACTAAGAATGTCAAAGAGGGATGATGAGGATAAGCTAGTTGATAACTTTGATGAGGAGCTTAGCTGGCCAAACAGTACGCCGGAAGTGCTTGTTTCTTCAAAAGTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGAAGATTTGTTAAAATCCACTAGCAATTTTAGCCAAGAAAATATAATTGGTTGTGGTGGGTTTGGTCTTGTCTACAGGGGGAATCTTCCAAATGGCATGAAGGTAGCTATCAAGAAACTTTCTGGGTATTGTGGTCAGGTGGAACGCGAATTCCAAGCTGAAGTAGAGGCCCTCTCAAGAGCTCAGCATAAGAACCTTGTTTCACTCAAAGGTTATTGTCAGCATGTTAATGACAGGTTGTTAATTTACTCCTACTTGGAGAATGGAAGTCTTGATTATTGGCTGCATGAGAGTGAGAATGGAAATTCAGCTCTAAAATGGGATGCAAGACTCAAGATTGCCAAAGGTTCAGCTCATGGATTGGCTTATTTGCACAAGGAGTGTAAACCACACATCGTGCACCGAGATATTAAATCTAGCAACATACTTTTGGATGATAAATTTGAAGCTTATTTGGCTGACTTTGGTCTCTCAAGGCTACTTCAACCCTATGATACCCATGTTTCAACAGATTTAGTAGGAACCTTAGGATATATTCCTCCAGAATATAGCCAGGCACTGAAAGCAACTTTTAAGGGTGATATTTATAGCTTTGGTATTGTTCTTTTTGAGCTTCTTACTGGTCGAAGGCCTGTAGAAGTCGTCATCGGGCAACGTAGCAGGAATATAGTGTCTTGGGTGTTTCAGATGAAATCTGAGAATAGGGAGCAAGAAATTTTTGATCCAGTTATTTGGCACAAGGATAATCAGAAACAGATCTTAGAGGTACTAGCTATTGCTTTTAAATGTGTAGATGAAGATCCAAAGGTGAGACCCCATATTGAATTAGTTGTTTCATTACTTGATAGTGTAGGATTTGATGGTTCTCAACAGTCATCTTAA 3162 0.401 MVLQRCYSMAFVVQWGFLACFICFSVGLETPARSCDKHDLLALKEFAGNLTKGSIITAWSDDVACCKWVGVVCNDVVDGAAVSRVSKLILPGMGLNGTISSSLAHLDELKVLNLSFNRLQGGLPSELSNMKQLKVLDLSHNMLSGPVGGALSHLQSIQVLNISSNSFVGDLSHFGGLQHLLALNISNNSFTGQFNSQICSSSKGVQILDISKNHFAGVLEWLGNCSRSLQELHLDSNLFSGPLPDSLYAMSALEQLSVSVNNFSGQLSKELSNLSNLKSLIVFGNRFSGELPNVFGNLLDLEQLIGHSNSFSGSLPSTLALCSKLRVLDLRNNSLTGSVGLNFTGLSSLFTLDLGSNHFNGSLPNSLSYCHELTMLSLAKNELTGYIPESYANLTSLLTLSLSNNSFENLSGALYVLQKSKSLTTVILTKNFHGEEIPHSLTAGFKSLVVLALGNCGLKGHIPAWLLNCTKLEVLDLSWNHLEGGVPSWIGSMDNLFYLDLSNNSLTGEIPKGLTEMKGLISPNYHISSLFAVAAIPLYVKRNKSANGLQYNHASSFPPSIYLSNNRLSGRIWPEIGRLKELHILDLSRNNITGTIPSSISKMKNLEILDLSNNSLIGCIPPSFTNLTFLSKFSVAYNHLQGPIPSGGQFSSFPNSSFEGNLGLCGETYRSCNSENNVGFATHSVGKLGKSSVLGLTIGLGVGLALLLAVILLRMSKRDDEDKLVDNFDEELSWPNSTPEVLVSSKVVLFQNSDCKDLTVEDLLKSTSNFSQENIIGCGGFGLVYRGNLPNGMKVAIKKLSGYCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHVNDRLLIYSYLENGSLDYWLHESENGNSALKWDARLKIAKGSAHGLAYLHKECKPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQALKATFKGDIYSFGIVLFELLTGRRPVEVVIGQRSRNIVSWVFQMKSENREQEIFDPVIWHKDNQKQILEVLAIAFKCVDEDPKVRPHIELVVSLLDSVGFDGSQQSS 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01438 1053 ProSiteProfiles Protein kinase domain profile. 770 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01438 1053 SMART LRR_typ_2 579 602 IPR003591 -
Cca04g01438 1053 SMART LRR_typ_2 274 297 IPR003591 -
Cca04g01438 1053 SMART LRR_typ_2 106 129 IPR003591 -
Cca04g01438 1053 SMART LRR_typ_2 130 153 IPR003591 -
Cca04g01438 1053 SMART LRR_typ_2 603 626 IPR003591 -
Cca04g01438 1053 SMART LRR_typ_2 394 417 IPR003591 -
Cca04g01438 1053 SMART LRR_typ_2 346 370 IPR003591 -
Cca04g01438 1053 SMART LRR_typ_2 493 517 IPR003591 -
Cca04g01438 1053 ProSitePatterns Protein kinases ATP-binding region signature. 776 799 IPR017441 GO:0005524
Cca04g01438 1053 SUPERFAMILY L domain-like 227 511 - -
Cca04g01438 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 449 514 - -
Cca04g01438 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 617 1043 - -
Cca04g01438 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 173 278 - -
Cca04g01438 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 165 - -
Cca04g01438 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 562 618 - -
Cca04g01438 1053 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 282 438 - -
Cca04g01438 1053 Pfam Protein kinase domain 771 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01438 1053 SUPERFAMILY Protein kinase-like (PK-like) 751 1041 IPR011009 -
Cca04g01438 1053 SUPERFAMILY L domain-like 460 666 - -
Cca04g01438 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 282 438 - -
Cca04g01438 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 562 618 - -
Cca04g01438 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 173 278 - -
Cca04g01438 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 33 165 - -
Cca04g01438 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 449 514 - -
Cca04g01438 1053 PANTHER PHYTOSULFOKINE RECEPTOR 2 617 1043 - -
Cca04g01438 1053 SMART LRR_sd22_2 106 129 - -
Cca04g01438 1053 SMART LRR_sd22_2 493 516 - -
Cca04g01438 1053 SMART LRR_sd22_2 603 629 - -
Cca04g01438 1053 SMART LRR_sd22_2 579 602 - -
Cca04g01438 1053 SMART LRR_sd22_2 322 343 - -
Cca04g01438 1053 SMART LRR_sd22_2 130 159 - -
Cca04g01438 1053 SMART LRR_sd22_2 394 412 - -
Cca04g01438 1053 SMART serkin_6 770 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01438 1053 Pfam Leucine rich repeat 108 166 IPR001611 GO:0005515
Cca04g01438 1053 Pfam Leucine rich repeat 324 383 IPR001611 GO:0005515
Cca04g01438 1053 Pfam Leucine rich repeat 581 640 IPR001611 GO:0005515
Cca04g01438 1053 SUPERFAMILY L domain-like 53 304 - -
Cca04g01438 1053 Gene3D Transferase(Phosphotransferase) domain 1 846 1047 - -
Cca04g01438 1053 PRINTS Leucine-rich repeat signature 496 509 - -
Cca04g01438 1053 PRINTS Leucine-rich repeat signature 603 616 - -
Cca04g01438 1053 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Cca04g01438 1053 Gene3D Ribonuclease Inhibitor 301 679 IPR032675 -
Cca04g01438 1053 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Cca04g01438 1053 Pfam Leucine rich repeat N-terminal domain 37 74 IPR013210 -
Cca04g01438 1053 Gene3D Ribonuclease Inhibitor 34 300 IPR032675 -
Cca04g01438 1053 Gene3D Phosphorylase Kinase; domain 1 737 845 - -
Cca04g01438 1053 Pfam Leucine Rich Repeat 471 491 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01438 Cca-Chr4 19447004 19451086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01438 271 662 Receptor kinase-like Gene Family AT1G55610 30.172 4.23e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Cca04g01438 Pkinase 7.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01438 - - gmx:100789534 1776.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01438 04 19447004 19451086 Cca04g01438 04 19447004 19451086 ECH