Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01437 ATGGGACTCCGGTGTTCCTCTTGCGAGTCTGGAAGTTGCAGTGGAGATGGTGCGGCATTTGACAGAAGGGTTTGTGCAGAGGATGGTGGGGGTGTTGAGTTCAAGGTGCTGGCAGTTAGGGTTTCAACGGCGAGGGCAGTTCATGCGTTGGGGATGAACAATAACAAAGCGCGGAAGGAGATGAGGGAATTGGGATGCATTTCGGTTTTGATCAAGATGTTGGATAGGAAGGGCGTGGAGGAGAAAGAAGGTTCCGCGATGGCATTGTCAGTGCTACTGATGCACCCGGCGAAACGGAGGGTGTTTTGGAAGGACGAAAGAGGGGTTATAGTAAGTTCAGCAACAACCACAAACCATCCTACACCATTAAAGAACAAGAAGACACGGATGCATCTCAAGAAAACAACATTGCAGACTCCCCCTCCCTCTTCCACTGTGCTCAACATCGATGGCTTAGTCACCTCCCCCACTTCTTCATCTAAGAGAAGGAGGGCAATACAGAAAAGGGTAGTGCAAATCCCAATCAAGGAGACAGAAGGGTGTAGGCTAAAAGGAGAAAGCAACACCCCACCCTCGGATTCATGGGCATGGAGAAAGTATGGGCAGAAACCCATCAAAGGTTCCCCTTATCCCTTGTGTGACTTTGGAGGATCCTCGCACTGA 663 0.5023 MGLRCSSCESGSCSGDGAAFDRRVCAEDGGGVEFKVLAVRVSTARAVHALGMNNNKARKEMRELGCISVLIKMLDRKGVEEKEGSAMALSVLLMHPAKRRVFWKDERGVIVSSATTTNHPTPLKNKKTRMHLKKTTLQTPPPSSTVLNIDGLVTSPTSSSKRRRAIQKRVVQIPIKETEGCRLKGESNTPPSDSWAWRKYGQKPIKGSPYPLCDFGGSSH 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01437 220 Gene3D WRKY domain 164 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca04g01437 220 Gene3D - 26 120 IPR011989 -
Cca04g01437 220 SUPERFAMILY ARM repeat 38 103 IPR016024 -
Cca04g01437 220 ProSiteProfiles WRKY domain profile. 192 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca04g01437 220 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 135 213 IPR044810 GO:0003700
Cca04g01437 220 Pfam WRKY DNA -binding domain 193 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca04g01437 220 PANTHER OS01G0750100 PROTEIN 135 213 - -
Cca04g01437 220 SUPERFAMILY WRKY DNA-binding domain 189 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca04g01437 220 MobiDBLite consensus disorder prediction 182 220 - -
Cca04g01437 220 MobiDBLite consensus disorder prediction 135 166 - -
Cca04g01437 220 MobiDBLite consensus disorder prediction 135 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01437 Cca-Chr4 19437502 19439342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01437 141 211 WRKY Transcription Factor Family AT1G29280 61.972 2.86e-22 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca04g01437 WRKY 2.7e-05 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01437 - - gmx:100793777 145.976