Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01425 ATGGGTGATACCAACTTGAGGCTGTGGCTGGATAAACCTGAACGATCAGTGAATGTCTTTGAATGCTTGCACATATTTAGGCAAATAGTGGAAATTGTTCATGTAGCTCATTCTCAAGGAATCGTTCATAATGTGAGGCCCTCCTACTTTGTCGTGTCATCTTTCAACAATGTCTCATTTATTGAGCCAGCAACTTGTTCAGATTGTGGCTCAGATGCTTTAGAAGAAGCTGTTGAGATTAAAACTCCAACGCCTCCTACTCTGGGAAGGGAAGATTTTCTACCTGTCAAGACTTCAACAGCTTATTTGTCAAACTCTAGTTGCATGTTGTCAAGTGTGGTGTTTTCAGCGCCTGCATTGTTGATAGATGAAACAGAAGAAAATGAAATGGAAAAGAGGAGAAAGGGTGAGGAAGTTGAAGGAAAGAAGCAACCATTTCCAATGAAACAGGTACTGCATATGGAGGAAAGTTGGTATACTAGTCCTGAAGAGGTAGCTGGTGCTCCAAATTCCTCTGCTTCAGATGCTTATCGGTTGGGAGTTCTCCTTTTTGAGCTATTTTGTCCACTCGGCTCAAGAGAAGAAAAGAACAGAACCATGTCTAGCCTAACACATAGAGTTCTTCCTCCTCAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCATTTTGCTTATGGTTATTACATCCTGAGCCTAAAAGTCGTCCAACATTGGCGGAGTTGTTGCAGAGTGAGTTTCTTAATGAACCAAGAGATGATATAGAGGAGTGTGAAGCAGCAGTAAAACTTAGAGAAAGAATAGATAATCAGGAGTTGTTGCTAGAATTCCTTTCAATAATTCAACAGAAAAAAGGGGAAGCTGCTGAGAAGTTGCAACATACTATCTCTTTTCTGTGTTCAGATATTGAAGAAGTAACTAAGCATAAAACTATATTTAAAGATATAACTGGCACTGGACTAGGGTATGATGATTGTTCAACATCCGTTACAGTTATTGATAATGATGAGGATTTTGCTGGTCTAGGGACCAGAAAACGGGTTAGACATGATCAGGGTATTGATGACACTGAAGGGTGTGATCATAACATAGGTGATGATGAGAAAAATGATGGAGGTGTTCTTTCAAAAAGTCCACGGTTTTTGAAGAATTTGGAGAAACTAGAATCAGCATATTTTTTGACACGAAGCAGATCAACCTATTCTAGAGAATCTGTTATTGTGACTGGAAGGAAATGTGTCAACAAAGTAGCATCAAAAGAGCAGTGTAGGGAGGGCAAAAGTCCTTGGAAAAATCCATTTCTTGAGGGTTTGTGCAAGTACCTATCTTTCAGCAAGTTAAAGGTTAAGGCTGACCTGAAACAAGGGGATCTTTTGCAGTCTTCTAACCTGGTGTGCACACTCAGTTTTGACCGCGATGCAGAATTTTTTGCTACTGCAGGAGCAAATAAGAAGATCAAAGTTTTTGAATGTGATACAACCATCAATGAGGATCGTGATATCCACTATCCAGTAGTGGAGATGGTTAGCAGATCAATATTGAGTAGTACATGTTGGAGTACTTATATCAAAAGTCAAATCGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGGAATAAAGTGCAGTCTGAAATGAGGGAGCATGATCAAAGAGTATGGTCCATTGATTTCTCATCAGCAAACCCTACATTGTTAGCAAGTGGGAGTGATGACGGTTCTGTCAAGCTATGGAATATCAATCAGGCAATCAGAACCAACATTATTTTTGCATTTTTTATGTGTTTTATTTTTGATGTATGA 1809 0.393 MGDTNLRLWLDKPERSVNVFECLHIFRQIVEIVHVAHSQGIVHNVRPSYFVVSSFNNVSFIEPATCSDCGSDALEEAVEIKTPTPPTLGREDFLPVKTSTAYLSNSSCMLSSVVFSAPALLIDETEENEMEKRRKGEEVEGKKQPFPMKQVLHMEESWYTSPEEVAGAPNSSASDAYRLGVLLFELFCPLGSREEKNRTMSSLTHRVLPPQLLLKWPKEASFCLWLLHPEPKSRPTLAELLQSEFLNEPRDDIEECEAAVKLRERIDNQELLLEFLSIIQQKKGEAAEKLQHTISFLCSDIEEVTKHKTIFKDITGTGLGYDDCSTSVTVIDNDEDFAGLGTRKRVRHDQGIDDTEGCDHNIGDDEKNDGGVLSKSPRFLKNLEKLESAYFLTRSRSTYSRESVIVTGRKCVNKVASKEQCREGKSPWKNPFLEGLCKYLSFSKLKVKADLKQGDLLQSSNLVCTLSFDRDAEFFATAGANKKIKVFECDTTINEDRDIHYPVVEMVSRSILSSTCWSTYIKSQIASSNFEGVVQLWDVTRNKVQSEMREHDQRVWSIDFSSANPTLLASGSDDGSVKLWNINQAIRTNIIFAFFMCFIFDV 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01425 602 Pfam WD domain, G-beta repeat 545 581 IPR001680 GO:0005515
Cca04g01425 602 SMART WD40_4 453 488 IPR001680 GO:0005515
Cca04g01425 602 SMART WD40_4 541 581 IPR001680 GO:0005515
Cca04g01425 602 SMART WD40_4 499 538 IPR001680 GO:0005515
Cca04g01425 602 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 583 - -
Cca04g01425 602 Gene3D Transferase(Phosphotransferase) domain 1 3 255 - -
Cca04g01425 602 SUPERFAMILY WD40 repeat-like 460 584 IPR036322 GO:0005515
Cca04g01425 602 Gene3D - 434 592 IPR015943 GO:0005515
Cca04g01425 602 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01425 602 PANTHER PROTEIN SPA1-RELATED 3 2 586 - -
Cca04g01425 602 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 590 IPR001680 GO:0005515
Cca04g01425 602 ProSitePatterns Trp-Asp (WD) repeats signature. 568 582 IPR019775 -
Cca04g01425 602 SUPERFAMILY Protein kinase-like (PK-like) 5 249 IPR011009 -
Cca04g01425 602 PANTHER PROTEIN SPA1-RELATED 2 2 586 IPR044630 GO:0009640
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01425 Cca-Chr4 18942101 18949158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01425 434 582 Miscellaneous Gene Families AT5G08390 27.273 3.89e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01425 - - gmx:100813635 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01102 10 13952640 13962101 Cca04g01425 04 18942101 18949158 ECH
Cca04g01425 04 18942101 18949158 Cca04g01425 04 18942101 18949158 ECH