Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01424 ATGGGTTGTGTCTGTTGCAAGCCCTCTGCCATTGAGGATAGCAAGGAGAGTCCAAGGGAGAGATTGTCGAGCAAGGCTCCGATGGACTCTCATGTGTTGAGGGGTGCTTCATCGAGGAGGGAGGATGCGTATAGGGTGAAGGATAAATGTGATGGTAATGATTTGAGAACTGCTTTGATTGATAAGCATGAGAATGGTTCCTTGGGGTTGCAAGGCGATAATGTTGAGAGGAAGAGGGAGAGAATGGAGTGTGTTGCTGCTCAACCACATCCGGGTGCTGGCAGTGTTCCCAAGGCCATGGAAGGGGAGCAGGTTGCAGCTGGATGGCCATCTTGGCTGGCAGCAGTGGCTGGAGAGGCTGTCAATGGATGGTTGCCGCGCCGTGCAGATTCTTTCGAGAAATTGGATAAAATTGGACAGGGAACTTACAGTAATGTTTATAGGGCTCGTGATCTTGAGCAAAAGAAAGTTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCAGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGCCTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTCGAATACATGGAGCATGACTTGGCTGGGCTAGCGTCACATCCTGGAGTGAAGTTTACAGAAGCACAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCATAGCTGTGGTGTGCTGCACCGTGACATTAAGGGTTCCAACCTTTTGATTGACAACAACGGAATCTTGAAGATTGCAGACTTTGGTTTGGCAAGTGTTTTTGATCCCAATCAAACTCAGCCTTTGACAAGCCGAGTTGTCACTCTTTGGTACCGCCCACCAGAGCTTTTACTGGGTGCTACACACTATGGCACTGCTGTAGATTTATGGAGTACAGGTTGCATACTTGCTGAGCTGTATGCTGGCAAACCTATAATGCCTGGGAGAACTGAGGTGGAGCAGTTACATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGATTATTGGAGAAAATCAAAGTTGCCCCATGCAACAATATTTAAGCCCCAACAACCCTACAGGCAATGTGTTGCCGACACATTCAAGGACTTCCCTGCACCTGCTTTAGCACTCATGGAGACTCTTTTGTCCATAGATCCTGCTGATCGTGGAAGTGCAGCATCTGCTTTGAAGAGTGAGTTCTTCACGACAAAGCCTCTACCTTGTGATCCTTCAAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAACTACGGGATGAACAAGCAAGAAGACAAGGGGCAGCAGCAGGTAAGGGCCAAAGACACGACCTTGAAAGAAGAGTAGCAAGAGAATCTCGAGCTGTCCCTGCACCAGATGCCAATGCTGAACTGCCCCTGTCAATGCAGAAGAGACAAAGTATGGCTCAATCAAAAAGCAGAAGTGAGAAGTTTAATCCTCATCCTGAAGAAGCTTCTGGATTTCCCATCGATCCCCCTAGATCATCACAAGCTGTAGAAGTAGGCATGGGACCTCAGGTACCGCAACATAAAAGAGCCTCTCATTCTGGTCCACTGGCTCACCGCACTGCATGGGCTAAAGCTGGGAAGAACCAGGATGAGGCTCCTAATATTTCAGTTGGGGGCGATCTATCAACAACTTCAGGCTTGGTTTCAGCCACCAGTATGTTGTCAGATGATCACAGAGAAAGGTCTGGATCATCACAAATGGAGGCTTCAAAACTAATAAACAGATTCCCTGGATCATTCAAGGATGTCTCTGAATCATCGATACAACAAGATCAAAGGCATCATGTACAGGGCCAAGTAGGCACTTCCCAAAACGAAGAAGGGAGAAGCAGCAACAAAGACCTAGTTCTTGTTGGTTATGGGGCAAAGGGTCATAAAATCCACTATTCTGGTCCATTGCTGGTTCCATCAAGCAACATGGATCAGATGTTGAAAGACCATGACCGCCAAATTCAAGAGGCAGTTAGACGGGCACGTTTGGATAAGGCAAAAATGAGAAGGCTTCAAGCTGAAGGGAACCAGGTAACCAATTCATTATTTGCTTCTGGTCGTTGA 2133 0.4637 MGCVCCKPSAIEDSKESPRERLSSKAPMDSHVLRGASSRREDAYRVKDKCDGNDLRTALIDKHENGSLGLQGDNVERKRERMECVAAQPHPGAGSVPKAMEGEQVAAGWPSWLAAVAGEAVNGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKVVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASVFDPNQTQPLTSRVVTLWYRPPELLLGATHYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRQCVADTFKDFPAPALALMETLLSIDPADRGSAASALKSEFFTTKPLPCDPSSLPKYPPSKEFDAKLRDEQARRQGAAAGKGQRHDLERRVARESRAVPAPDANAELPLSMQKRQSMAQSKSRSEKFNPHPEEASGFPIDPPRSSQAVEVGMGPQVPQHKRASHSGPLAHRTAWAKAGKNQDEAPNISVGGDLSTTSGLVSATSMLSDDHRERSGSSQMEASKLINRFPGSFKDVSESSIQQDQRHHVQGQVGTSQNEEGRSSNKDLVLVGYGAKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQVTNSLFASGR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01424 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Cca04g01424 710 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Cca04g01424 710 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Cca04g01424 710 MobiDBLite consensus disorder prediction 12 27 - -
Cca04g01424 710 MobiDBLite consensus disorder prediction 444 569 - -
Cca04g01424 710 PANTHER CYCLIN-DEPENDENT KINASE 1 692 - -
Cca04g01424 710 MobiDBLite consensus disorder prediction 608 637 - -
Cca04g01424 710 MobiDBLite consensus disorder prediction 1 40 - -
Cca04g01424 710 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01424 710 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01424 710 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01424 710 MobiDBLite consensus disorder prediction 483 498 - -
Cca04g01424 710 SUPERFAMILY Protein kinase-like (PK-like) 126 424 IPR011009 -
Cca04g01424 710 Gene3D Transferase(Phosphotransferase) domain 1 215 455 - -
Cca04g01424 710 PANTHER CELL DIVISION PROTEIN KINASE 1 692 - -
Cca04g01424 710 MobiDBLite consensus disorder prediction 444 470 - -
Cca04g01424 710 CDD STKc_CDK9_like 132 416 - -
Cca04g01424 710 Coils Coil 677 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01424 Cca-Chr4 18900345 18907451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01424 124 473 Core Cell Cycle Gene Families AT5G10270 52.186 9.02e-121 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca04g01424 Pkinase 6.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01424 - - gmx:100781183 1287.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01424 04 18900345 18907451 Cca04g01424 04 18900345 18907451 ECH